View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3031_high_1 (Length: 730)

Name: NF3031_high_1
Description: NF3031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3031_high_1
NF3031_high_1
[»] chr8 (14 HSPs)
chr8 (125-714)||(33983229-33983825)
chr8 (429-643)||(33953694-33953908)
chr8 (429-643)||(33993214-33993428)
chr8 (429-648)||(33976290-33976509)
chr8 (3-81)||(33983870-33983948)
chr8 (429-643)||(33961000-33961214)
chr8 (219-269)||(33953976-33954026)
chr8 (219-271)||(33961279-33961331)
chr8 (219-271)||(33976574-33976626)
chr8 (219-269)||(33993496-33993546)
chr8 (654-697)||(33953620-33953663)
chr8 (654-697)||(33960926-33960969)
chr8 (654-697)||(33976221-33976264)
chr8 (654-697)||(33993140-33993183)
[»] scaffold0391 (1 HSPs)
scaffold0391 (391-648)||(13253-13510)
[»] chr7 (2 HSPs)
chr7 (263-643)||(8275358-8275733)
chr7 (149-199)||(8275232-8275284)


Alignment Details
Target: chr8 (Bit Score: 493; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 125 - 714
Target Start/End: Complemental strand, 33983825 - 33983229
Alignment:
Q  125 gctttttaagagttggagaaccatatagaaggatttactagctttattatcatgtaaaaaaatctatagaatgagaaaattnnnnnnnnnnnnt--ttga 222  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               ||||    
T  33983825 gctttttaagagttggagaaccatatagaaggatttactagctttattatcatgtaaaaaaatctatagaatgagaaaattaaaaaaaaaaaaaaattga 33983726  T
Q  223 atttattgattgagaatagctaatacaaatcatgtagttatacaaaagattgcaaaagaattgtaattatatactataatactagagcaacttacataaa 322  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  33983725 atttattgattgagaatagctaatacaaatcatgtagttatacaaaagattgcaaaagaattgtaattatatactacaatactagagaaacttacataaa 33983626  T
Q  323 caagtattagaaaaggttggaaagctattcaaagaaagggaggagttttatcat-atacagaagtcattcaaagaagaggtcttatgagatcatttacta 421  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  33983625 caagtattagaaaaggttggaaagctattcaaagaaagggaggagttttatcatgatacagaagtcattcaaagaagaggtcttatgagatcatttacta 33983526  T
Q  422 aagctagtttaagttagcatcaacctgaggaacctctatcttcatattaggaagcataagctggaaatcttctcatcaaactatcgtctctttattgcac 521  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  33983525 aagttagtttaagttagcatcaacctgaggaacctctatcttcatattaggaagcataagctggaaatcttctcatcaaactatcgtctcttcattgcac 33983426  T
Q  522 gttat----cactgtcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaatta 617  Q
    |||||    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  33983425 gttatatatcactatcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgcaacgtacagattccttagattgcacaaatta 33983326  T
Q  618 ccaaattcctcagataaacttgaaagacttaaatgatagatttagtagcttaccaatggaagtcggtatagcttccaagttgatcggtacatgaaat 714  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33983325 ccaaattcctcagataaatttgaaagacttaaatgatagatttagtagcttaccaatggaagtcggtatagcttccaagttgatcggtacatgaaat 33983229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 429 - 643
Target Start/End: Complemental strand, 33953908 - 33953694
Alignment:
Q  429 tttaagttagcatcaacctgaggaacctctatcttcatattaggaagcataagctggaaatcttctcatcaaactatcgtctctttattgcacgttatca 528  Q
    ||||||||| ||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||| |||  | |   |||||||| || ||| ||||||     
T  33953908 tttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgcaggttatcg 33953809  T
Q  529 ctgtcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctc 628  Q
       |||||||   ||||||| | ||||||||||  ||||||  ||||  ||||| ||||| || ||||||| ||||||||||||||||||||||||||||    
T  33953808 tcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtccagattctttagattgcacaaattaccaaattcctc 33953709  T
Q  629 agataaacttgaaag 643  Q
    || ||||||||||||    
T  33953708 aggtaaacttgaaag 33953694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 429 - 643
Target Start/End: Complemental strand, 33993428 - 33993214
Alignment:
Q  429 tttaagttagcatcaacctgaggaacctctatcttcatattaggaagcataagctggaaatcttctcatcaaactatcgtctctttattgcacgttatca 528  Q
    ||||||||| ||||||| ||| ||||||||||||||||||| ||||||||| ||||||||||||| |||  | |   |||||||| || ||| ||||||     
T  33993428 tttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgcaggttatcg 33993329  T
Q  529 ctgtcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctc 628  Q
       |||||||   ||||||| | ||||||||||  ||||||  ||||  ||||| ||||| || ||||||| ||||||||||||||||||||||||||||    
T  33993328 tcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatgtccagattctttagattgcacaaattaccaaattcctc 33993229  T
Q  629 agataaacttgaaag 643  Q
    || ||||||||||||    
T  33993228 aggtaaacttgaaag 33993214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 429 - 648
Target Start/End: Complemental strand, 33976509 - 33976290
Alignment:
Q  429 tttaagttagcatcaacctgaggaacctctatcttcatattaggaagcataagctggaaatcttctcatcaaactatcgtctctttattgcacgttatca 528  Q
    ||||||||| ||||||| ||| |||||||||||||||||||  |||||||| ||||||||||||| |||  | |   |||||||| || ||| ||||||     
T  33976509 tttaagttaacatcaacatgaagaacctctatcttcatattgtgaagcatatgctggaaatcttcccatgtagcagccgtctcttcatcgcaggttatcg 33976410  T
Q  529 ctgtcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctc 628  Q
       |||||||   ||||||| | ||||||||||  ||||||  ||||  ||||  ||||| || ||||||| ||||||||||||||||||||||||||||    
T  33976409 tcttcaaattctgaagattgacaactgagaatggcaattcaatacttgcacaagttgccatgtccagattctttagattgcacaaattaccaaattcctc 33976310  T
Q  629 agataaacttgaaagactta 648  Q
    || |||||||||||| ||||    
T  33976309 aggtaaacttgaaaggctta 33976290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 3 - 81
Target Start/End: Complemental strand, 33983948 - 33983870
Alignment:
Q  3 aggagcagcacagaccatgtttgacaagtttggaggatcgacaactttttgccaaattttatctatgattgaagaactc 81  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  33983948 aggagcaacaaagaccatgtttgacaagtttggaggatcgacaactttttgccaaatttgatctatgattgaagaactc 33983870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 429 - 643
Target Start/End: Complemental strand, 33961214 - 33961000
Alignment:
Q  429 tttaagttagcatcaacctgaggaacctctatcttcatattaggaagcataagctggaaatcttctcatcaaactatcgtctctttattgcacgttatca 528  Q
    ||||||||| ||||||| ||| ||||||||||||||||||| ||||||||| |||| |||||||| |||  | |   |||||||| || ||| ||||||     
T  33961214 tttaagttaacatcaacatgaagaacctctatcttcatattgggaagcatatgctgaaaatcttcccatgtagcagccgtctcttcatcgcaggttatcg 33961115  T
Q  529 ctgtcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctc 628  Q
       |||||||   |||||||   ||||||||||  ||||||  || |  ||||| ||||| ||||||||| ||||||||||| | |||||||||||||||    
T  33961114 tcttcaaattctgaagattgaaaactgagaatggcaattcaatacctgcacaacttgccatgtacagatttcttagattgcaaagattaccaaattcctc 33961015  T
Q  629 agataaacttgaaag 643  Q
    || ||||||||||||    
T  33961014 aggtaaacttgaaag 33961000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 33954026 - 33953976
Alignment:
Q  219 ttgaatttattgattgagaatagctaatacaaatcatgtagttatacaaaa 269  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  33954026 ttgaatttattgattgagaatagctaatacaaatcatgtatttatacaaaa 33953976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 33961331 - 33961279
Alignment:
Q  219 ttgaatttattgattgagaatagctaatacaaatcatgtagttatacaaaaga 271  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  33961331 ttgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaaga 33961279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 33976626 - 33976574
Alignment:
Q  219 ttgaatttattgattgagaatagctaatacaaatcatgtagttatacaaaaga 271  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  33976626 ttgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaaga 33976574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 33993546 - 33993496
Alignment:
Q  219 ttgaatttattgattgagaatagctaatacaaatcatgtagttatacaaaa 269  Q
    |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  33993546 ttgaatatattgattgagaatagctaatacaaatcatgtatttatacaaaa 33993496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 697
Target Start/End: Complemental strand, 33953663 - 33953620
Alignment:
Q  654 tagatttagtagcttaccaatggaagtcggtatagcttccaagt 697  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||    
T  33953663 tagatttaacagctttccaatggaagtcggtatagcttccaagt 33953620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 697
Target Start/End: Complemental strand, 33960969 - 33960926
Alignment:
Q  654 tagatttagtagcttaccaatggaagtcggtatagcttccaagt 697  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||    
T  33960969 tagatttaacagctttccaatggaagtcggtatagcttccaagt 33960926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 697
Target Start/End: Complemental strand, 33976264 - 33976221
Alignment:
Q  654 tagatttagtagcttaccaatggaagtcggtatagcttccaagt 697  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||    
T  33976264 tagatttaacagctttccaatggaagtcggtatagcttccaagt 33976221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 654 - 697
Target Start/End: Complemental strand, 33993183 - 33993140
Alignment:
Q  654 tagatttagtagcttaccaatggaagtcggtatagcttccaagt 697  Q
    ||||||||  ||||| ||||||||||||||||||||||||||||    
T  33993183 tagatttaacagctttccaatggaagtcggtatagcttccaagt 33993140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0391 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: scaffold0391
Description:

Target: scaffold0391; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 391 - 648
Target Start/End: Complemental strand, 13510 - 13253
Alignment:
Q  391 caaagaagaggtcttatgagatcatttactaaagctagtttaagttagcatcaacctgaggaacctctatcttcatattaggaagcataagctggaaatc 490  Q
    |||| ||||||||||  ||||||||||||| |||| | ||||||||| ||||||| ||||||||||||||||||||||| ||||||||| |||| |||||    
T  13510 caaataagaggtcttgggagatcatttactgaagccaatttaagttaacatcaacatgaggaacctctatcttcatattgggaagcataggctgaaaatc 13411  T
Q  491 ttctcatcaaactatcgtctctttattgcacgttatcactgtcaaatttaaaagattggcgactgagaatgataattcacaacttaaacaacctgccacg 590  Q
    ||| ||| |  |    ||||||| || ||| ||||||    |||| ||   ||||||| | ||||||||||  ||||||  ||||  ||||| ||||| |    
T  13410 ttcccatgaggcagctgtctcttcatcgcaagttatcgtcttcaagttctgaagattgacaactgagaatggcaattcaatacttgcacaacttgccatg 13311  T
Q  591 tacagattccttagattgcacaaattaccaaattcctcagataaacttgaaagactta 648  Q
    |||||||| ||||||||||| | ||||||||||||||||| |||||||||||| ||||    
T  13310 tacagatttcttagattgcaaagattaccaaattcctcaggtaaacttgaaaggctta 13253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 263 - 643
Target Start/End: Original strand, 8275358 - 8275733
Alignment:
Q  263 tacaaaagattgcaaaagaattgtaattatatactataatactagagcaacttacataaacaagtattagaaaaggttggaaagctattcaaagaaaggg 362  Q
    ||||||||||| |||||||||| || |||||||||||||||||||||||  ||||| | ||||||  ||| ||||||||||| || |||||||| ||||     
T  8275358 tacaaaagattacaaaagaattttagttatatactataatactagagcactttacagatacaagtgctaggaaaggttggaatgccattcaaaggaagga 8275457  T
Q  363 aggagttttatcatatacagaagtcattcaaagaagaggtcttatgagatcatttactaaagctagtttaagttagcatcaacctgaggaacctctatct 462  Q
    ||| |  |      ||||| ||  |||||||||||| |||| ||  ||||| |||| | | |  | ||||||||| ||||||| ||||||||||||||||    
T  8275458 aggggggt-----gatacaaaatccattcaaagaagcggtcgtagcagatcctttaatgatggcaatttaagttaacatcaacatgaggaacctctatct 8275552  T
Q  463 tcatattaggaagcataagctggaaatcttctcatcaaactatcgtctctttattgcacgttatcactgtcaaatttaaaagattggcgactgagaatga 562  Q
    ||||| |||||||| || | ||||||||||| |||  | |   |||||||| || ||| ||| ||    |||||||   ||||||| |  |||| ||||     
T  8275553 tcatactaggaagcgtatgatggaaatcttcccatgtagcagccgtctcttcatcgcaggttttcgtcttcaaattctgaagattgacatctgaaaatgg 8275652  T
Q  563 taattcacaacttaaacaacctgccacgtacagattccttagattgcacaaattaccaaattcctcagataaacttgaaag 643  Q
     |  |||  ||||  ||||| ||||| ||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||    
T  8275653 aagctcaatacttgcacaacttgccatgtatagattccttaggttgcacaaattaccaaattcctcgggtaaacttgaaag 8275733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 199
Target Start/End: Original strand, 8275232 - 8275284
Alignment:
Q  149 atagaaggatttactagct--ttattatcatgtaaaaaaatctatagaatgag 199  Q
    |||| |||||||||||||   ||||||||||||||| ||||||||||||||||    
T  8275232 ataggaggatttactagcaccttattatcatgtaaacaaatctatagaatgag 8275284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University