View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3031_high_6 (Length: 244)
Name: NF3031_high_6
Description: NF3031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3031_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 181; Significance: 6e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 5312868 - 5313085
Alignment:
| Q |
1 |
catggaagtattgaactgaaactaagtagcaagcaagcaatacctgtgctcttaagtaactagtatctgctaaccatcacaaagtgattgctaaatgcct |
100 |
Q |
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| T |
5312868 |
catggaagtattgaattgaaactaagtagcaagcaagcaatacctgtgctcttaagtaactagtatctgctaaccatcgcaaagtgattgctaa------ |
5312961 |
T |
|
| Q |
101 |
aaattattttaacagttcagtttttaaaaatagttcggttaagttttgttctaaatagttattttaacagacctatcaacaaattttgaataagatgcgt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5312962 |
--attattttaacagttcagtttttaaaaatagttcggttaagttttgttctaattagttattttaacagacctaccaacaaattttgaataagatgcgt |
5313059 |
T |
|
| Q |
201 |
caaaatctcagttaaatgtctctcct |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
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| T |
5313060 |
caaaatctcagttaaatgtctctcct |
5313085 |
T |
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