View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3031_low_2 (Length: 541)
Name: NF3031_low_2
Description: NF3031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3031_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 18 - 257
Target Start/End: Complemental strand, 25544293 - 25544053
Alignment:
| Q |
18 |
tttttaacattgaatagtttcaacattgaactaatcaatgttnnnnnnncttttcaacctccacaataatgacaccattattgctcattccgcggccgag |
117 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
25544293 |
tttttaacattgaatagtttaaacattgaactattcaatgttaaaaaaacgattcaacctccacaataatgacaccattattgctcattcggcggccgag |
25544194 |
T |
|
| Q |
118 |
agcttgaaacacagacacatctttgagatatgaagctagacaacggtctaattcaaaggagatcttgctaatattgtnnnnnnnnnnntctctgcttagt |
217 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
25544193 |
agcttgaaacacagacgcatcttcgagatatgaagctagacaacggtctaattcaaaggagatcttgctaatattgtaaaaaaaaaaacctctgcttagt |
25544094 |
T |
|
| Q |
218 |
atg-tttgcatttccaaaacgacaatattcgatttcgacaa |
257 |
Q |
| |
|
||| |||||||||||||||||||||| || ||||||||||| |
|
|
| T |
25544093 |
atgttttgcatttccaaaacgacaatctttgatttcgacaa |
25544053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 25544056 - 25544018
Alignment:
| Q |
298 |
acaagctcatataacatgaacgaatcgtagttggataga |
336 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25544056 |
acaagctcatataacatgaacgaatcgtagtcggataga |
25544018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University