View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3031_low_3 (Length: 528)
Name: NF3031_low_3
Description: NF3031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3031_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 471; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 511
Target Start/End: Original strand, 40298098 - 40298608
Alignment:
| Q |
1 |
tgaaaagttttttgaataaaaatgccttcctataataggcatattttgtgtatgtcaaattcagtcggaagcccactgtaatgcaaaacgtattctgcct |
100 |
Q |
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|||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | ||| |||||||||||||||||||| |
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| T |
40298098 |
tgaacagttttttgaataaaaatgacttcctataataggcatattttgtgtatgtcaaattcaggaggaagccaattgtcatgcaaaacgtattctgcct |
40298197 |
T |
|
| Q |
101 |
acctttttaaaggaacggtcagtgtagagtgaatatccaatgtgggggaaatacttctggcctccacttcatttatattcagcctgtccatgtagatttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40298198 |
acctttttaaaggaacggtcagtgtagagtgaatatccaatgtgggggaaatacttctggcctccacttcatttatattcagcctgtccatgtagatttt |
40298297 |
T |
|
| Q |
201 |
cagcaaaagtcagttgatcgataaaaatagaatattgaatatggagaatcagaaagtatgtgtattatctataactgaagcatgtatgcagtatgcgtaa |
300 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40298298 |
cagcaaaagtcagttgattgataaaaatagaatattgaatatggagaatcagaaagtatgtgtattatctataactgaagcatgtatgcagtatgcgtaa |
40298397 |
T |
|
| Q |
301 |
cttcaaaggtttgtcggaaaattagttcaggtagggactcactatgcaagaacaaggcaagtcattgatttttactgctttaacttatagtagttaaact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
40298398 |
cttcaaaggtttgtcggaaaattagttcaggtagggactcactatgcaagaacaaggcaagtcattgaattttactgctttaacttatagtagttaaact |
40298497 |
T |
|
| Q |
401 |
tatcatatatgcatcctaatttttgtatttgttgccgagttagataaaattattcgataaattaatataaaaattcaaataagaaaaacagagtcacatg |
500 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40298498 |
tatcatatatgcatcctaatttttgtatttgttgccgggttagataaaattattcgataaattaatataaaaattcaaataagaaaaacagagtcacatg |
40298597 |
T |
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| Q |
501 |
catatggaggg |
511 |
Q |
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| T |
40298598 |
catatggaggg |
40298608 |
T |
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