View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3031_low_4 (Length: 431)
Name: NF3031_low_4
Description: NF3031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3031_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 19937850 - 19938254
Alignment:
| Q |
11 |
cacagaacttggtaaacattgtatgctagttgttatttgatctactaattgaattcacctgttagggtttttaaaaatttcaactttcctcggctacaga |
110 |
Q |
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| T |
19937850 |
cacagaacttggtaaacattgtatgctagttgttatttgatctactaattgaattcacctgttagggtttttaaaaatttcaactttcctcggctacaga |
19937949 |
T |
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| Q |
111 |
taaagagaaaaacatgaaagtcatcatcattactataacagtgctaacaggaactgtcatagttcttgcttgtgcgtatatcatgtggagaaggagaact |
210 |
Q |
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| T |
19937950 |
taaagagaaaaacatgaaagtcatcatcattactataacagtgctaacaggaactgtcatagttcttgcttgtgcgtatatcatgtggagaaggagaact |
19938049 |
T |
|
| Q |
211 |
aaccaccatggtaatatatcatcttattggattcaaattatactataaacgagttttctacatattagtaaagttaattcaaatcatatacaatctgaat |
310 |
Q |
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| T |
19938050 |
aaccaccatggtaatatatcatcttattggattcaaattatactataaacgagttttctacatattagtaaagttaattcaaatcatatacaatctgaat |
19938149 |
T |
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| Q |
311 |
tttgataaaatcaatctcagtacagtagctagtttctgttttctttaatttaacaatttcaaatcacaatcaccgtcaattttttaattgtttcatgctt |
410 |
Q |
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| T |
19938150 |
tttgataaaatcaatctcattacagtagctagtttctgttttctttaatttaacaatttcaaatcacaatcaccgtcaattttttaattgtttcatgctt |
19938249 |
T |
|
| Q |
411 |
ctttc |
415 |
Q |
| |
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||||| |
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| T |
19938250 |
ctttc |
19938254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 415
Target Start/End: Original strand, 19968989 - 19969393
Alignment:
| Q |
11 |
cacagaacttggtaaacattgtatgctagttgttatttgatctactaattgaattcacctgttagggtttttaaaaatttcaactttcctcggctacaga |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19968989 |
cacagaacttggtaaacattgtatgctagttgttatttgatctactaattgaattcacctgttagggtttttaaaaatttcaactttcctcggctacaga |
19969088 |
T |
|
| Q |
111 |
taaagagaaaaacatgaaagtcatcatcattactataacagtgctaacaggaactgtcatagttcttgcttgtgcgtatatcatgtggagaaggagaact |
210 |
Q |
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| T |
19969089 |
taaagagaaaaacatgaaagtcatcatcattactataacagtgctaacaggaactgtcatagttcttgcttgtgcgtatatcatgtggagaaggagaact |
19969188 |
T |
|
| Q |
211 |
aaccaccatggtaatatatcatcttattggattcaaattatactataaacgagttttctacatattagtaaagttaattcaaatcatatacaatctgaat |
310 |
Q |
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| T |
19969189 |
aaccaccatggtaatatatcatcttattggattcaaattatactataaacgagttttctacatattagtaaagttaattcaaatcatatacaatctgaat |
19969288 |
T |
|
| Q |
311 |
tttgataaaatcaatctcagtacagtagctagtttctgttttctttaatttaacaatttcaaatcacaatcaccgtcaattttttaattgtttcatgctt |
410 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19969289 |
tttgataaaatcaatctcattacagtagctagtttctgttttctttaatttaacaatttcaaatcacaatcaccgtcaattttttaattgtttcatgctt |
19969388 |
T |
|
| Q |
411 |
ctttc |
415 |
Q |
| |
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||||| |
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| T |
19969389 |
ctttc |
19969393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 137
Target Start/End: Complemental strand, 47601740 - 47601685
Alignment:
| Q |
82 |
taaaaatttcaactttcctcggctacagataaagagaaaaacatgaaagtcatcat |
137 |
Q |
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||||| ||||||||||||| || ||||| |||||||| |||||||| ||||||||| |
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| T |
47601740 |
taaaactttcaactttccttggttacaggtaaagagagaaacatgacagtcatcat |
47601685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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