View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3031_low_5 (Length: 381)
Name: NF3031_low_5
Description: NF3031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3031_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 372
Target Start/End: Complemental strand, 4092716 - 4092349
Alignment:
| Q |
1 |
caattctggtgattgtgcaccaatttctccgcatgcatatataggtgttcttttcacttgaaaatagaatgtgtgtaaaataaattcgtctatatcatca |
100 |
Q |
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| T |
4092716 |
caattctggtgattgtgcaccaatttctccgcatgcatatataggtgttcttttcacttgaaaatagaacgtgtgtaaaataaattcgtctatatcatca |
4092617 |
T |
|
| Q |
101 |
ttcatacacggacaaaacaaataa-ccatctccactccactcttgatttaacgatcttataattaatatggtccctccaatcccctttatataaacttca |
199 |
Q |
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| T |
4092616 |
ttcatacacggacaaaacaaaaaaaccatctccactccactcttgatttaacgatcttataattaatatggtccccccaatcccctttatataaacttta |
4092517 |
T |
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| Q |
200 |
atccatgaaatggaacaatatatatagccccactcattcattcttctatttcaaccaacaaaaaccttccctattctcttactatatgaaatatatgcac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092516 |
atccatgaaatggaacaatatatatagccccactcattcattcttctatttcaaccaacaaaaaccttccctattctcttactatatgaaatatatgcac |
4092417 |
T |
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| Q |
300 |
acataacataacataacaatgttgtttattagtgtaatcttaaatgttcctttggcttcaacaatattcatct |
372 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4092416 |
acataacat-----aacaatgttgtttattagtgtaatcttaaatgttcctttggcttcaacaatattcatct |
4092349 |
T |
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