View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3031_low_6 (Length: 349)
Name: NF3031_low_6
Description: NF3031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3031_low_6 |
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| [»] scaffold0288 (2 HSPs) |
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| [»] scaffold0475 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 4660556 - 4660436
Alignment:
| Q |
217 |
tgaatatgatggaagagtttaaatgacacactctatgaaattgatgaagctgaaatagcggaatcataagcaaatcgtgatgctctacatttttcccgaa |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4660556 |
tgaatatgatggaagagtttaaatgacacact--atgaaattgatgaagctaaaatagcggaatcataagcaaatcgtgatgctctacatttttcccgaa |
4660459 |
T |
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| Q |
317 |
tcagcaggtagcacagacttgat |
339 |
Q |
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||||||||||||||||||||||| |
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| T |
4660458 |
tcagcaggtagcacagacttgat |
4660436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 4660693 - 4660643
Alignment:
| Q |
169 |
atagggagaatattaaactagagactctacaatgtgcaccaccctaagtga |
219 |
Q |
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| T |
4660693 |
atagggagaatattaaactagagactctacaatgtgcaccaccctaagtga |
4660643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 7e-34; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 29 - 133
Target Start/End: Original strand, 49326022 - 49326127
Alignment:
| Q |
29 |
aatctcacggctaaaa-aggggaaggcatgtatctcgcagtggtgatcccttcatgtactattttaatgattaaaattgtggtttctatagactcataaa |
127 |
Q |
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||||||||||||||| |||||||||| ||||||| ||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
49326022 |
aatctcacggctaaatcaggggaaggcgtgtatcttgcagtagtgatcccttcatgtactattttaaggattaaaattatggtttctatagactcataaa |
49326121 |
T |
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| Q |
128 |
atcgat |
133 |
Q |
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|||||| |
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| T |
49326122 |
atcgat |
49326127 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 217 - 338
Target Start/End: Original strand, 49330512 - 49330629
Alignment:
| Q |
217 |
tgaatatgatggaagagtttaaatgacacactctatgaaattgatgaagctgaaatagcggaatcataagcaaatcgtgatgctctacatttttcccgaa |
316 |
Q |
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||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||||||||||||| ||||| |
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| T |
49330512 |
tgaatctgatggaagagttcaaatgacacactctatgaaattgatgaagctaaaatggc----acagaagcaaatcgtgatgctctacattttttccgaa |
49330607 |
T |
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| Q |
317 |
tcagcaggtagcacagacttga |
338 |
Q |
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|| | ||||||||||||||||| |
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| T |
49330608 |
tcggtaggtagcacagacttga |
49330629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 49329608 - 49329678
Alignment:
| Q |
131 |
gatgtaagcgatcagagaaaatagtttctttaagaa-aaatagggagaatattaaactagagactctacaa |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |
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| T |
49329608 |
gatgtaagagatcagagaaaatagtttctttaagaagaaatagagagaatattaaatgagagactctacaa |
49329678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 339
Target Start/End: Complemental strand, 20721 - 20601
Alignment:
| Q |
217 |
tgaatatgatggaagagtttaaatgacacactctatgaaattgatgaagctgaaatagcggaatcataagcaaatcgtgatgctctacatttttcccgaa |
316 |
Q |
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||||||| |||||||||||||||||||||||| | ||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
20721 |
tgaatataatggaagagtttaaatgacacactgt--gaatttgataaagctaaaatagcggaatcataagcaaatcgggatgctctacatttttcccaaa |
20624 |
T |
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| Q |
317 |
tcagcaggtagcacagacttgat |
339 |
Q |
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|||| |||| || |||||||||| |
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| T |
20623 |
tcaggaggtggcccagacttgat |
20601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 20855 - 20808
Alignment:
| Q |
172 |
gggagaatattaaactagagactctacaatgtgcaccaccctaagtga |
219 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20855 |
gggagaattttaaactagagactctacaatgtgcaccaccctaagtga |
20808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 302 - 339
Target Start/End: Complemental strand, 7771 - 7734
Alignment:
| Q |
302 |
tacatttttcccgaatcagcaggtagcacagacttgat |
339 |
Q |
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| T |
7771 |
tacatttttcctgaatcaggaggtagcacagacttgat |
7734 |
T |
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