View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3031_low_8 (Length: 261)

Name: NF3031_low_8
Description: NF3031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3031_low_8
NF3031_low_8
[»] chr6 (14 HSPs)
chr6 (1-248)||(7132098-7132345)
chr6 (1-133)||(7138059-7138191)
chr6 (1-133)||(7135136-7135268)
chr6 (1-236)||(6423710-6423945)
chr6 (1-199)||(6427023-6427221)
chr6 (7-204)||(8913442-8913639)
chr6 (142-244)||(6403366-6403468)
chr6 (166-248)||(6594139-6594221)
chr6 (4-247)||(7993568-7993799)
chr6 (1-110)||(6596251-6596360)
chr6 (144-203)||(6410532-6410591)
chr6 (1-126)||(19633012-19633140)
chr6 (1-112)||(10579114-10579225)
chr6 (123-197)||(10579302-10579376)
[»] chr1 (1 HSPs)
chr1 (76-236)||(33161000-33161160)
[»] chr4 (3 HSPs)
chr4 (1-41)||(571330-571370)
chr4 (1-32)||(1547719-1547750)
chr4 (166-203)||(3438186-3438223)
[»] chr8 (1 HSPs)
chr8 (1-41)||(21236154-21236194)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 7132345 - 7132098
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132345 tctcccaaaacattacaactttggcatctctcgattgttccaacatgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 7132246  T
Q  101 agaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggat 200  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  7132245 agaactcaaccttggtcaccctttggtgaacaatcaaactaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttgaat 7132146  T
Q  201 cttaggtgcacatattttctgaatgatgaacatgtttctgagttgtct 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7132145 cttaggtgcacatattttctgaatgatgaacatgtttctgagttgtct 7132098  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7138191 - 7138059
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7138191 tctcccaaaacattacaactttggcatctctcgattgttccaacacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 7138092  T
Q  101 agaactcaaccttggtcaccctttggtgaacaa 133  Q
    |||||||||||||||||||| ||||||| ||||    
T  7138091 agaactcaaccttggtcaccttttggtgcacaa 7138059  T

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Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 7135268 - 7135136
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  7135268 tctcccaaaacattacaactttggcatctctcgattgttccaacacgtgtctctacaacaacgatctgttacttattgccgattgttttccaatgcacaa 7135169  T
Q  101 agaactcaaccttggtcaccctttggtgaacaa 133  Q
    |||||||||||||||||||| ||||||| ||||    
T  7135168 agaactcaaccttggtcaccttttggtgcacaa 7135136  T

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Target: chr6; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 6423945 - 6423710
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 100  Q
    ||||||||||||| ||||||||||| ||||||  |||||  |  | |||||||| ||||| ||| ||||||||| | ||| ||||||| ||| |||| ||    
T  6423945 tctcccaaaacataacaactttgacctctctcacttgttatagcatgtttctctccaacaccgacctgttacttgtggccaattgtttcccattgctcaa 6423846  T
Q  101 agaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggat 200  Q
    ||||||||||||    | ||||||||| | | || |||| || |||||||||||||||| |  | ||||||||||||| | |||||||||||||||| ||    
T  6423845 agaactcaacctcaaacgccctttggtcatcgatgaaactaatttcattaatggaattcgcaatttgttatccaagtgtcaatgtatacaacatttgaat 6423746  T
Q  201 cttaggtgcacatattttctgaatgatgaacatgtt 236  Q
    |||   ||||  ||||||||||| ||| ||||||||    
T  6423745 cttgactgcatttattttctgaaggatcaacatgtt 6423710  T

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Target: chr6; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 6427221 - 6427023
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 100  Q
    |||||||||| |||||||||||||| | ||||  ||||| |  ||| ||| |||  ||||||||||||| ||  ||||  |||||||| ||  |||| ||    
T  6427221 tctcccaaaatattacaactttgacctttctcacttgttacggtacttttttctgtaacaacgatctgtcacccattgttgattgtttccctttgctcaa 6427122  T
Q  101 agaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttgga 199  Q
    | ||||||||||   |||||||||||| | |||| |  | ||||||||||||  |||||||||||||||||||||||| | ||||||||||||||||||    
T  6427121 acaactcaacctccatcaccctttggtcatcaataagcctaacttcattaattcaattcactgtatgttatccaagtgtccatgtatacaacatttgga 6427023  T

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Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 204
Target Start/End: Original strand, 8913442 - 8913639
Alignment:
Q  7 aaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaagaact 106  Q
    |||| |||||||||||||| |||||| |||||||||| | ||||||  | |||||| | |||||| |  |||  | |||||| ||  |||||||||||||    
T  8913442 aaaagattacaactttgacctctctcaattgttccaacatgtttcttgataacaacaaactgttattcgttgttggttgtttccctttgcttaaagaact 8913541  T
Q  107 caaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatctta 204  Q
    ||||||| ||||| | ||||| ||| |||| |  ||  || |||||  |||||||  | ||||||||||||| | |||| |||||||||||| |||||    
T  8913542 caaccttagtcacaccttggtcaactatcacagtaatgtctttaattaaattcaccatttgttatccaagtgtcaatgtttacaacatttggttctta 8913639  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 244
Target Start/End: Complemental strand, 6403468 - 6403366
Alignment:
Q  142 acttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctga 241  Q
    |||| |||||||||||  ||| | |||||||||||||  ||||||||||||||||||||||||    ||  |||||||||||||||  ||||||| ||||    
T  6403468 actttattaatggaatatactctctgttatccaagtgtagatgtatacaacatttggatcttaataacagttattttctgaatgatttacatgttgctga 6403369  T
Q  242 gtt 244  Q
    |||    
T  6403368 gtt 6403366  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 248
Target Start/End: Original strand, 6594139 - 6594221
Alignment:
Q  166 tgttatccaagtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtttctgagttgtct 248  Q
    ||||||||||||| |||||||||||||||||| |||||| || | |   ||||||||||||| |||||||| | |||||||||    
T  6594139 tgttatccaagtgtcgatgtatacaacatttgaatcttaagtacgctcgttttctgaatgatcaacatgttgccgagttgtct 6594221  T

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Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 247
Target Start/End: Original strand, 7993568 - 7993799
Alignment:
Q  4 cccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaaaga 103  Q
    ||||||||||||||| |||||| |||||| ||||||||||||| |||||    ||   ||  |||||||| |||||| ||||||| ||  |||| |||||    
T  7993568 cccaaaacattacaattttgacctctctcaattgttccaatacttttcttggtaagggcggcctgttactcattgccaattgtttccctttgctcaaaga 7993667  T
Q  104 actcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatctt 203  Q
    ||||||||| ||||            ||||| | || | || |||||||| | |||||| | |||| |||||||| ||||||||||||||||| ||||||    
T  7993668 actcaacctcggtc------------acaatgacactagctacattaatgaatttcactatttgttgtccaagtgtcgatgtatacaacatttagatctt 7993755  T
Q  204 aggtgcacatattttctgaatgatgaacatgtttctgagttgtc 247  Q
    |   | |  |||||||||||||||  ||||||| ||||||||||    
T  7993756 aatggtatttattttctgaatgatctacatgttgctgagttgtc 7993799  T

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Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 6596251 - 6596360
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 100  Q
    ||||||||||||| ||||||||||| ||||||  |||||| |  |  ||||||||||| || ||  ||||||| ||||| |||||||| ||| |||| ||    
T  6596251 tctcccaaaacataacaactttgacctctctcacttgttctataaactttctctacaaaaatgacttgttactcattgctgattgtttcccattgctcaa 6596350  T
Q  101 agaactcaac 110  Q
    ||||||||||    
T  6596351 agaactcaac 6596360  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 6410591 - 6410532
Alignment:
Q  144 ttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttggatctt 203  Q
    ||||||||||||||||||| | ||||||||||||| | |||| |||||||| ||||||||    
T  6410591 ttcattaatggaattcactatctgttatccaagtgccaatgtttacaacatatggatctt 6410532  T

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Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 19633140 - 19633012
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttactta---ttgccgattgttttccaatgct 97  Q
    ||||| ||| ||||||||||||||| ||||||  |||  |  | | |||||||||||||||||| |||||||| |   ||||||||||||| ||| || |    
T  19633140 tctccgaaagcattacaactttgacctctctcacttgcactcacatgtttctctacaacaacgaactgttactcaacattgccgattgtttcccattgtt 19633041  T
Q  98 taaagaactcaaccttggtcaccctttgg 126  Q
     |||||||||||||| | | |||||||||    
T  19633040 gaaagaactcaacctcgcttaccctttgg 19633012  T

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Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 10579114 - 10579225
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttccaatacgtttctctacaacaacgatctgttacttattgccgattgttttccaatgcttaa 100  Q
    ||||||||||||| ||||||||||||  | ||  |||||| | |   ||||||||||| || ||  |||||||  ||||||||||||| ||| |||| ||    
T  10579114 tctcccaaaacataacaactttgacaagtttcacttgttctactgactttctctacaaaaatgacttgttactcgttgccgattgtttcccattgctcaa 10579213  T
Q  101 agaactcaacct 112  Q
    ||||||||||||    
T  10579214 agaactcaacct 10579225  T

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Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 197
Target Start/End: Original strand, 10579302 - 10579376
Alignment:
Q  123 ttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaagtggcgatgtatacaacatttg 197  Q
    ||||| ||||||| |||  | ||||||||||||||||||| | ||||||| ||||| | |||||| |||||||||    
T  10579302 ttggtcaacaatcgaactgatttcattaatggaattcactctctgttatcaaagtgtccatgtattcaacatttg 10579376  T

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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 33161160 - 33161000
Alignment:
Q  76 ttgccgattgttttccaatgcttaaagaactcaaccttggtcaccctttggtgaacaatcaaacaaacttcattaatggaattcactgtatgttatccaa 175  Q
    ||||||||||||| ||  |||| ||| |||||||||| |||||||||  | | |||||||| || ||||||||||||||| |||||| | | ||||||||    
T  33161160 ttgccgattgtttccctttgctcaaaaaactcaacctcggtcaccctcagttcaacaatcacactaacttcattaatggatttcactctctcttatccaa 33161061  T
Q  176 gtggcgatgtatacaacatttggatcttaggtgcacatattttctgaatgatgaacatgtt 236  Q
     || | || ||||||| |||||||||| |    ||| ||||||||||||||| ||||||||    
T  33161060 ctgtcaatatatacaatatttggatctaaatcacacttattttctgaatgatcaacatgtt 33161000  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 571370 - 571330
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttcc 41  Q
    |||||||||| ||||||||||||||||||||| ||||||||    
T  571370 tctcccaaaatattacaactttgacatctctcaattgttcc 571330  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 1547719 - 1547750
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctc 32  Q
    ||||||||||||||||||||||||||||||||    
T  1547719 tctcccaaaacattacaactttgacatctctc 1547750  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 3438186 - 3438223
Alignment:
Q  166 tgttatccaagtggcgatgtatacaacatttggatctt 203  Q
    ||||||||||||| | ||||||||||||||||||||||    
T  3438186 tgttatccaagtgtcaatgtatacaacatttggatctt 3438223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 21236194 - 21236154
Alignment:
Q  1 tctcccaaaacattacaactttgacatctctcgattgttcc 41  Q
    |||||||||| | ||||||||||||||||||| ||||||||    
T  21236194 tctcccaaaatactacaactttgacatctctcaattgttcc 21236154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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