View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3032_high_1 (Length: 1601)
Name: NF3032_high_1
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_1 |
 | |
|
| [»] scaffold0203 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 1113; Significance: 0; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1113; E-Value: 0
Query Start/End: Original strand, 366 - 1582
Target Start/End: Complemental strand, 14176264 - 14175048
Alignment:
| Q |
366 |
aaataatatataaatttttagtcagtatacaatattccctttgtttgttcagttcccttcaatctccaaattttcctacacaagatgaagtctttccaat |
465 |
Q |
| |
|
||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176264 |
aaataatatgtaaatttttagtgagtatacaatattccctttgtttgttcagttcccttcaatctccaaattttcctacacaagatgaagtctttccaat |
14176165 |
T |
|
| Q |
466 |
tagccaatgagtcttctccactttccttaactcaagattttatccttccaaaacacaaaagaccacgcctttcagaggttacttttttagactcaatacc |
565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176164 |
tagccaatgagtcttctccactttccttaactcaagattttatccttccaaaacacaaaagaccacgcctttcagaggttacttttttagactcaatacc |
14176065 |
T |
|
| Q |
566 |
aataattgatttaagtcactatgatgacaaaaacccttcaaccatggaagtggttcacaagatttcaaaggcttgtgaggaatttggtttcttccaaatt |
665 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14176064 |
aataattgatttaagtcactatgatgacaaaaacccttcatccatggaagtggttcacaagatttcaaaggcttgtgaggaatttggtttcttccaaatt |
14175965 |
T |
|
| Q |
666 |
gtgaaccatggtgttccagaccaagtttgcactaaaatgatgaaagcaatttctagtctttttgagttgccaccagaaaaaagagaacatctgtcctcaa |
765 |
Q |
| |
|
|||||||||||||| || || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14175964 |
gtgaaccatggtgtccctaacaaagtttgcactaaaatgatgaaagcaatttcaagtctttttgagttgccaccagaagaaagagaacatctgtcctcaa |
14175865 |
T |
|
| Q |
766 |
cagatcctaccaagaatgtaaggttgatcaattattaccttcaagttgaaggtggagaaaaggtgaagttatggagtgaatgttttgctcatcaatggta |
865 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175864 |
cagatcctaccaagaatgtaaggttgatcaattattaccttcaagttgaaggtgaagaaaaggtgaagttatggagtgaatgttttgctcatcaatggta |
14175765 |
T |
|
| Q |
866 |
tcctattgatgatatcattcagcttttaccagaaaaaattgggaatcaatacaggtgagaaaaattctaaatttagttcaacaaaatgataaactagatg |
965 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
14175764 |
tcctattgatgatatcattcagcttttaccagaaaaaattgggaatcaatacaggtgaggaaaattataaatttagttcaacaaaatgataaactagatg |
14175665 |
T |
|
| Q |
966 |
ctgtcagtgtgaccaatagagtgcatcacatcctttgattttgcggagaatcacaatcaaatgtggttggcacaatctcaatggtgttcaccgtcacgga |
1065 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |||||||| |
|
|
| T |
14175664 |
ctgtcaatgtgaccaatagagtgcatcacatcctttgattttgcggagaatcacaatcaaatgtggttggcacaatctcaacggtgttcgcggtcacgga |
14175565 |
T |
|
| Q |
1066 |
cattttttagaaatagttgatctgatgctagtatatttagtctatgcttgattttatttttgaagaatctaaaattgattatagaggtatacgattgatt |
1165 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
14175564 |
cattttttagaaatagttgatctgatgctagtatatttagtctacgcttgattttatttttgaagaatctaaaattgattatagaagtataccattgatt |
14175465 |
T |
|
| Q |
1166 |
ctgacgtatttagatgtatccactcactttgaatttgttagtcactagaattgattttagagattgaatttgttagttccattcgcttataaccatattt |
1265 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||| |||||| |
|
|
| T |
14175464 |
ttgacgtgtttagatgtatccactcactttgaatttgttagtcactataattgattttagagattgaatttgttagttctactcgcttataactatattt |
14175365 |
T |
|
| Q |
1266 |
tactttaaaaagaacactcaattttgtataaacatatccaaacataaatcattttacatttagctcatatttaattagaatcaattaaaatacattcatt |
1365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175364 |
tactttaaaaagaacactcaattttgtataaacatatccaaacataaatcattttacatttagctcatatttaattagaatcaattaaaatacattcatt |
14175265 |
T |
|
| Q |
1366 |
caaaatcaattttgcaccgcataaccaaacacgcactaatacttttgcttttcacagggaggctttcaccgaatatgcaaaggaggttggttcattggtg |
1465 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175264 |
caaaatcaattttgcaccgcataaccaaacacgcactaatacttttgcttttcacagagaggctttcaccgaatatgcaaaggaggttggttcattggtg |
14175165 |
T |
|
| Q |
1466 |
agaaggcttttgagtttgatatcaatagggcttggcttagaggaggactgtttgttgaagaagttgggtgagcagcctagacaaagagcacaagcaaatt |
1565 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14175164 |
agaaggcttttgagtttgatatcaatagggcttggcttagaggaggactgtttgttgaagaagttgggtgagcagcctagacaaagagcacaagcaaatt |
14175065 |
T |
|
| Q |
1566 |
tctatccaccatgtcct |
1582 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
14175064 |
tctatccaccatgtcct |
14175048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 405 - 930
Target Start/End: Complemental strand, 14172773 - 14172249
Alignment:
| Q |
405 |
tttgtttgttcagttcccttcaatctccaaattttcctacacaagatgaagtctttccaattagccaatgagtcttctccactttccttaactcaagatt |
504 |
Q |
| |
|
|||||||||||| || ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||| ||| |
|
|
| T |
14172773 |
tttgtttgttcaatttccttcaatctc-aaattttcttacacaagatggagtctttccaattagccaatgaatcttctcccctttccttaactcctaatt |
14172675 |
T |
|
| Q |
505 |
ttatccttccaaaacacaaaagaccacgcctttcagaggttacttttttagactcaataccaataattgatttaagtcactatgatgacaaaaacccttc |
604 |
Q |
| |
|
||||||| ||| ||||||||||||||| |||||||||||||| | |||||||||||| || ||||||||| ||||| | | ||||| ||| |||||||| |
|
|
| T |
14172674 |
ttatcctcccagaacacaaaagaccacacctttcagaggttaaatatttagactcaattcccataattgatctaagttattgtgatggcaacaacccttc |
14172575 |
T |
|
| Q |
605 |
aaccatggaagtggttcacaagatttcaaaggcttgtgaggaatttggtttcttccaaattgtgaaccatggtgttccagaccaagtttgcactaaaatg |
704 |
Q |
| |
|
| || |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14172574 |
atccttggaagtgattcacaagatttcaaaggcttgtgaagaatttggtttcttccaaattgtgaaccatggtgttcctgaccaagtttgcactaaaatg |
14172475 |
T |
|
| Q |
705 |
atgaaagcaatttctagtctttttgagttgccaccagaaaaaagagaacatctgtcctcaacagatcctaccaagaatgtaaggttgatcaattattacc |
804 |
Q |
| |
|
|||||||||||| | | | ||||||||| ||||||| ||||||||||||| || ||||||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
14172474 |
atgaaagcaattaccaacttctttgagttggcaccagaggaaagagaacatctttcatcaacagataataccaagaatgtaaggttgttcaattattacc |
14172375 |
T |
|
| Q |
805 |
ttcaagttgaaggtggagaaaaggtgaagttatggagtgaatgttttgctcatcaatggtatcctattgatgatatcattcagcttttaccagaaaaaat |
904 |
Q |
| |
|
||||||| || |||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14172374 |
ttcaagtggatggtggagaaaaggttaagttgtggagtgaatgttttgctcatccatggtatcctattgatgatatcattcagcttttaccagaaaaaat |
14172275 |
T |
|
| Q |
905 |
tgggaatcaatacaggtgagaaaaat |
930 |
Q |
| |
|
||||| |||||||||||||| ||||| |
|
|
| T |
14172274 |
tgggactcaatacaggtgagcaaaat |
14172249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 173; E-Value: 3e-92
Query Start/End: Original strand, 610 - 930
Target Start/End: Complemental strand, 14180029 - 14179709
Alignment:
| Q |
610 |
tggaagtggttcacaagatttcaaaggcttgtgaggaatttggtttcttccaaattgtgaaccatggtgttccagaccaagtttgcactaaaatgatgaa |
709 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
14180029 |
tggatgtggttcacaagatttcaaaggcatgtgaggaatttggtttcttccaaattgtgaaccatggtgttcctgaccaagtttgcactaaaatgatgaa |
14179930 |
T |
|
| Q |
710 |
agcaatttctagtctttttgagttgccaccagaaaaaagagaacatctgtcctcaacagatcctaccaagaatgtaaggttgatcaattattaccttcaa |
809 |
Q |
| |
|
||||||| | | | ||||||||| ||||||| ||||| ||||||| || |||||||||| ||||||||||||||| ||| ||||||||| |||| | |
|
|
| T |
14179929 |
agcaattacaaacttctttgagttggcaccagaggaaagaaaacatctttcatcaacagatcataccaagaatgtaagattggtcaattatttacttcga |
14179830 |
T |
|
| Q |
810 |
gttgaaggtggagaaaaggtgaagttatggagtgaatgttttgctcatcaatggtatcctattgatgatatcattcagcttttaccagaaaaaattggga |
909 |
Q |
| |
|
|| || |||||||||| ||||||||| ||||||||| ||||| ||||| |||||||||||| |||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
14179829 |
gtagatggtggagaaacggtgaagttgtggagtgaaaattttgttcatccatggtatcctatggatgatatcatttctcttctaccagaaaatattggga |
14179730 |
T |
|
| Q |
910 |
atcaatacaggtgagaaaaat |
930 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
14179729 |
cccaatacaggtgagaaaaat |
14179709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 157; E-Value: 9e-83
Query Start/End: Original strand, 1365 - 1582
Target Start/End: Complemental strand, 14171872 - 14171651
Alignment:
| Q |
1365 |
tcaaaatcaattttgcaccgcataaccaaacacgcacta----atacttttgcttttcacagggaggctttcaccgaatatgcaaaggaggttggttcat |
1460 |
Q |
| |
|
|||||||||||||| ||||| | |||||||||| | || |||||||| |||||||||| ||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
14171872 |
tcaaaatcaattttacaccgtaaaaccaaacacactcttcattatacttttacttttcacagagaggctttcactgaatatgcaaaagaggttggttcat |
14171773 |
T |
|
| Q |
1461 |
tggtgagaaggcttttgagtttgatatcaatagggcttggcttagaggaggactgtttgttgaagaagttgggtgagcagcctagacaaagagcacaagc |
1560 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14171772 |
tggtgagaaggcttttgagtttgatatcaatagggcttggcttagaggaggattgtttgttgaagaagttgggtgagcagcctagacaaagagcacaatc |
14171673 |
T |
|
| Q |
1561 |
aaatttctatccaccatgtcct |
1582 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
14171672 |
aaatttctatccaccatgtcct |
14171651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 128; E-Value: 2e-65
Query Start/End: Original strand, 1404 - 1579
Target Start/End: Complemental strand, 14179531 - 14179356
Alignment:
| Q |
1404 |
atacttttgcttttcacagggaggctttcaccgaatatgcaaaggaggttggttcattggtgagaaggcttttgagtttgatatcaatagggcttggctt |
1503 |
Q |
| |
|
|||||| |||||||| |||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
14179531 |
atacttatgcttttcttagggaggctttcaccgaatatgcaaaggagattagttcattggtgagaaggcttttgagtttgatatcaattgggcttggctt |
14179432 |
T |
|
| Q |
1504 |
agaggaggactgtttgttgaagaagttgggtgagcagcctagacaaagagcacaagcaaatttctatccaccatgt |
1579 |
Q |
| |
|
|||||| || | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
14179431 |
agaggaagatttcttgttgaagaagttgggtgagcaacctagacaaagagcacaggcaaatttctatccaccatgt |
14179356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 105; E-Value: 1e-51
Query Start/End: Original strand, 445 - 585
Target Start/End: Complemental strand, 14180170 - 14180030
Alignment:
| Q |
445 |
acaagatgaagtctttccaattagccaatgagtcttctccactttccttaactcaagattttatccttccaaaacacaaaagaccacgcctttcagaggt |
544 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| ||| ||||||||||||||| |||||||||||| |
|
|
| T |
14180170 |
acaagatgaaatctttccaatttgccaatgagtcttctccagtttccttaactccagattttatcctcccagaacacaaaagaccacacctttcagaggt |
14180071 |
T |
|
| Q |
545 |
tacttttttagactcaataccaataattgatttaagtcact |
585 |
Q |
| |
|
|||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
14180070 |
tactttttcagactctataccaataattgatttaagtcact |
14180030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 54; E-Value: 3e-21
Query Start/End: Original strand, 1072 - 1153
Target Start/End: Complemental strand, 14172130 - 14172049
Alignment:
| Q |
1072 |
ttagaaatagttgatctgatgctagtatatttagtctatgcttgattttatttttgaagaatctaaaattgattatagaggt |
1153 |
Q |
| |
|
||||||| | ||||||| | ||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
14172130 |
ttagaaaaacttgatcttaagctagtatatttagtctatacttgattttatttttgaagattctaaaattgattctagaggt |
14172049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 12934888 - 12934805
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacataaacgttgacc-aatcaaaattgaaattttgctaaagggaataaa |
323 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||| |||||||| | |||||||||| |||||| |||||| ||||| |
|
|
| T |
12934888 |
cacacgtggcatccaactcactcaagtgaggtgctacatatgcgttgaccgagtcaaaattgaggttttgcaaaaggggataaa |
12934805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 323
Target Start/End: Complemental strand, 12949052 - 12948969
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacataaacgttgacc-aatcaaaattgaaattttgctaaagggaataaa |
323 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||| ||||| |||||||| | |||||||||| |||||| |||||| ||||| |
|
|
| T |
12949052 |
cacacgtggcatccaactcactcaagtgaggtgctacatatgcgttgaccgagtcaaaattgaggttttgcaaaaggggataaa |
12948969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1206 - 1269
Target Start/End: Complemental strand, 14172011 - 14171948
Alignment:
| Q |
1206 |
gtcactagaattgattttagagattgaatttgttagttccattcgcttataaccatattttact |
1269 |
Q |
| |
|
||||||||||||| ||||| | ||||||||||||||||| | || ||| ||| ||||||||||| |
|
|
| T |
14172011 |
gtcactagaattggttttaaacattgaatttgttagttctactcacttttaaacatattttact |
14171948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1287 - 1352
Target Start/End: Complemental strand, 19563825 - 19563760
Alignment:
| Q |
1287 |
ttttgtataaacatatccaaacataaatcattttacatttagctcatatttaattagaatcaatta |
1352 |
Q |
| |
|
|||| |||||| | || |||||||||||||||||||||| ||||||| |||| ||||||||||| |
|
|
| T |
19563825 |
ttttatataaatacattcaaacataaatcattttacattcagctcatttttatccagaatcaatta |
19563760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 2e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-19
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 17353761 - 17353863
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacataaacgttgaccaatcaaaattgaaattttgctaaagggaataaatgtg-ggggtcactttt |
339 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||| ||||||||| ||||||||| | |||||| |||||| |||| || |||||||||||| |
|
|
| T |
17353761 |
cacatgtggcacccaattcactcaagtgaagtgccacataagcgttgaccagtcaaaattggagttttgcaaaagggggtaaacatgaggggtcactttt |
17353860 |
T |
|
| Q |
340 |
gcc |
342 |
Q |
| |
|
||| |
|
|
| T |
17353861 |
gcc |
17353863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 4e-17
Query Start/End: Original strand, 241 - 342
Target Start/End: Original strand, 20583863 - 20583964
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacataaacgttgaccaatcaaaattgaaattttgctaaagggaataaatgtg-ggggtcactttt |
339 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |||||| | ||||||||| | |||||| ||| ||| ||||| || |||||||||||| |
|
|
| T |
20583863 |
cacatgtggcacccaactcactcaagtgaagtgccacataagcgttgattagtcaaaattggagttttgc-aaaaggagtaaatatgaggggtcactttt |
20583961 |
T |
|
| Q |
340 |
gcc |
342 |
Q |
| |
|
||| |
|
|
| T |
20583962 |
gcc |
20583964 |
T |
|
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Target: scaffold0203 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0203
Description:
Target: scaffold0203; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 323
Target Start/End: Original strand, 15992 - 16075
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacataaacgttgacc-aatcaaaattgaaattttgctaaagggaataaa |
323 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| |||||||| | |||||||||| |||||| |||||| ||||| |
|
|
| T |
15992 |
cacacgtggcatccaactcactcaagtgaggtgccacatatgcgttgaccgagtcaaaattgaggttttgcaaaaggggataaa |
16075 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000006; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 323
Target Start/End: Original strand, 20127238 - 20127321
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacataaacgttgacc-aatcaaaattgaaattttgctaaagggaataaa |
323 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||| |||||||| | |||||||||| |||||| |||||| ||||| |
|
|
| T |
20127238 |
cacacgtggcatccaactcactcaagtgaggtgccacatatgcgttgaccgagtcaaaattgaggttttgcaaaaggggataaa |
20127321 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 241 - 323
Target Start/End: Original strand, 42702003 - 42702086
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacataaacgttga-ccaatcaaaattgaaattttgctaaagggaataaa |
323 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| |||||| | | |||||||||| |||||| |||||| ||||| |
|
|
| T |
42702003 |
cacatgtggcatccaactcactcaagtgaggtgccacatatgcgttgatcgagtcaaaattgaggttttgcaaaaggggataaa |
42702086 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 1293 - 1332
Target Start/End: Original strand, 44439339 - 44439378
Alignment:
| Q |
1293 |
ataaacatatccaaacataaatcattttacatttagctca |
1332 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
44439339 |
ataaacatatccaaacataaatcactttacatttaactca |
44439378 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 1287 - 1324
Target Start/End: Original strand, 411803 - 411840
Alignment:
| Q |
1287 |
ttttgtataaacatatccaaacataaatcattttacat |
1324 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
411803 |
ttttatataaacacatccaaacataaatcattttacat |
411840 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 633 - 682
Target Start/End: Complemental strand, 6315040 - 6314991
Alignment:
| Q |
633 |
aaggcttgtgaggaatttggtttcttccaaattgtgaaccatggtgttcc |
682 |
Q |
| |
|
||||||||| |||||||||| |||||| || | ||||||||||||||||| |
|
|
| T |
6315040 |
aaggcttgtaaggaatttggattcttcaaagtggtgaaccatggtgttcc |
6314991 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.00000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.00000000001
Query Start/End: Original strand, 49 - 94
Target Start/End: Original strand, 18666778 - 18666823
Alignment:
| Q |
49 |
ttatgaaaaaagaatttgaagttgctaggtttgatgaattgcgggg |
94 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
18666778 |
ttatgaaaaaagaatttgaagttgctgggtttgatgaattgtgggg |
18666823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 342
Target Start/End: Original strand, 18667219 - 18667306
Alignment:
| Q |
255 |
aactcactcaagtgaagtgccacataaacgttgaccaatcaaaattgaaattttgctaaagggaataaatgtgg-gggtcacttttgcc |
342 |
Q |
| |
|
||||||||||||||||||||||||||| || | |||| |||||||||| ||||||||||||| |||| ||| |||||||||||||| |
|
|
| T |
18667219 |
aactcactcaagtgaagtgccacataagcg-taaccagtcaaaattgaggttttgctaaagggggaaaatatggagggtcacttttgcc |
18667306 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 279
Target Start/End: Complemental strand, 49700584 - 49700546
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacat |
279 |
Q |
| |
|
|||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
49700584 |
cacacgtggcatccaactcactcaagtgaggtgccacat |
49700546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 150 - 179
Target Start/End: Original strand, 18666867 - 18666896
Alignment:
| Q |
150 |
ttggattctcacgtgcccccttccaattcc |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18666867 |
ttggattctcacgtgcccccttccaattcc |
18666896 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 645 - 680
Target Start/End: Original strand, 14209597 - 14209632
Alignment:
| Q |
645 |
gaatttggtttcttccaaattgtgaaccatggtgtt |
680 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14209597 |
gaatatggtttcttccaaattgtgaaccatggtgtt |
14209632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 645 - 680
Target Start/End: Original strand, 14217372 - 14217407
Alignment:
| Q |
645 |
gaatttggtttcttccaaattgtgaaccatggtgtt |
680 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
14217372 |
gaatatggtttcttccaaattgtgaaccatggtgtt |
14217407 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000004
Query Start/End: Original strand, 241 - 323
Target Start/End: Original strand, 5972149 - 5972232
Alignment:
| Q |
241 |
cacatgtggcatccaactcactcaagtgaagtgccacataaacgttgacc-aatcaaaattgaaattttgctaaagggaataaa |
323 |
Q |
| |
|
|||| ||||| ||||||||||||||||| |||||||||| |||||||| | |||||||||| |||||| |||||| ||||| |
|
|
| T |
5972149 |
cacacgtggcgtccaactcactcaagtgtggtgccacatatgcgttgaccgagtcaaaattgaggttttgcaaaaggggataaa |
5972232 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000006
Query Start/End: Original strand, 293 - 342
Target Start/End: Original strand, 41774718 - 41774767
Alignment:
| Q |
293 |
tcaaaattgaaattttgctaaagggaataaatgtgggggtcacttttgcc |
342 |
Q |
| |
|
|||||||||| |||||| ||||||| ||||| ||||||||||||||||| |
|
|
| T |
41774718 |
tcaaaattgagcttttgcaaaagggagtaaatatgggggtcacttttgcc |
41774767 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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