View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_high_12 (Length: 377)
Name: NF3032_high_12
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_12 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 38522533 - 38522898
Alignment:
| Q |
11 |
atcatcaccagtaatgaaggcacaatttgctactagaaattcggtatatataaacaaatttagtgaccaatatatatttttggtctctgtagcatccaat |
110 |
Q |
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| T |
38522533 |
atcatcaccagtaatgaag-cacaacttgctactagaaattcggtatatataaacaaatttagtgaccaatatatatttttggtctctgtagcatccaat |
38522631 |
T |
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| Q |
111 |
taaacggcttatttttcaaaccggtctctaaattagtcgataaacatacaacttttatgaaaattgactaaaccactagtcgttaatgttggtgactgat |
210 |
Q |
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| T |
38522632 |
taaacggcttatttttcaaaccggtctctaaattagtcgataaacatactacttttatgaaaattgactaaaccactagtcgttaatgttggtgactgat |
38522731 |
T |
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| Q |
211 |
ttgtgaaaccattacttaagttgagtctcaccatgaacaccggtgtctcttataatggacataaatctctcagtaccacgcttcagtattggattgtaat |
310 |
Q |
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| T |
38522732 |
ttgtgaaaccattacttaagttgagtctcaccatgaacaccggtgtctcttataatggacataaatctctcagtaccacgcttcagtattggattgtaat |
38522831 |
T |
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| Q |
311 |
aagtaaacaaagcaactggagtagataattctggaacaacctgcaaaatcaaccatttagaatgtca |
377 |
Q |
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| T |
38522832 |
aagtaaacaaagcaactggagtagataattctggaacaacctgaaaaatcaaccatttagaatgtca |
38522898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 216 - 367
Target Start/End: Complemental strand, 41388656 - 41388505
Alignment:
| Q |
216 |
aaaccattacttaagttgagtctcaccatgaacaccggtgtctcttataatggacataaatctctcagtaccacgcttcagtattggattgtaataagta |
315 |
Q |
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| T |
41388656 |
aaaccatcacatcagttgagtctcaccatgaacgccagtgtctcttacgatggacataaattttccagtaccacgcttcaggattgggttgtaataagta |
41388557 |
T |
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| Q |
316 |
aacaaagcaactggagtagataattctggaacaacctgcaaaatcaaccatt |
367 |
Q |
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| T |
41388556 |
aacagtgcaatcggagtagatatttgtggaataacctgccatatcaaccatt |
41388505 |
T |
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