View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3032_high_14 (Length: 340)

Name: NF3032_high_14
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3032_high_14
NF3032_high_14
[»] chr1 (4 HSPs)
chr1 (3-321)||(36526360-36526659)
chr1 (21-317)||(37923702-37923996)
chr1 (37-290)||(37871803-37872056)
chr1 (221-257)||(35051804-35051840)
[»] chr5 (3 HSPs)
chr5 (3-321)||(4430479-4430798)
chr5 (3-317)||(23269746-23270059)
chr5 (223-262)||(26917294-26917333)
[»] chr8 (1 HSPs)
chr8 (3-317)||(29468435-29468749)
[»] chr2 (7 HSPs)
chr2 (21-282)||(40728311-40728566)
chr2 (20-192)||(10785850-10786022)
chr2 (138-292)||(9252262-9252415)
chr2 (72-192)||(13019138-13019258)
chr2 (221-304)||(24588653-24588736)
chr2 (49-271)||(37490630-37490852)
chr2 (177-262)||(8294968-8295053)
[»] scaffold0305 (1 HSPs)
scaffold0305 (36-293)||(18748-18998)
[»] chr4 (1 HSPs)
chr4 (222-259)||(43381799-43381836)
[»] chr3 (1 HSPs)
chr3 (179-292)||(17571196-17571309)


Alignment Details
Target: chr1 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 3 - 321
Target Start/End: Complemental strand, 36526659 - 36526360
Alignment:
Q  3 tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc 102  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526659 tggattagaccagtagctggggaagtgaagtgcaatgtcgacgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc 36526560  T
Q  103 gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttgg 202  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |                 
T  36526559 gatgggagttcattaaagcgaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagctagaggtctaaaagaagcta------------- 36526473  T
Q  203 tactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgatt 302  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36526472 ------gaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgatt 36526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 21 - 317
Target Start/End: Complemental strand, 37923996 - 37923702
Alignment:
Q  21 ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaag 120  Q
    |||||||||||||||||||| |||||| |||||||||||||  |||| |||||  | |||||||||||||||||||| |||||| |||||||||||||||    
T  37923996 ggggaagtgaagtgcaatgttgatgcaacaatttttaaggaacaaggttgtta--gagtcggtatgtgtctaagaggggatcgaggggagttcattaaag 37923899  T
Q  121 caaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccag 220  Q
    |||||||| | | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||| |       
T  37923898 caaagacaacatagtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataaaatggcttggtaccttgaggtttccttc 37923799  T
Q  221 ggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattctcaatacttgcaaa 317  Q
    ||||||||| |||||||||||||||||||||||||| |||||||| |||||  ||||||||||||||||||| ||||| ||||| ||||||||||||    
T  37923798 ggtgtctatagaacttgattgcaagcaagtggttgatggcatctcaagcaatctcagcaccaattccatgttcggcgcaattctgaatacttgcaaa 37923702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 37 - 290
Target Start/End: Original strand, 37871803 - 37872056
Alignment:
Q  37 atgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggta 136  Q
    |||| ||||| |||| ||| |||||  ||| ||||||||||||| | |||||||| ||||| |||| | |||||| |||||  |  |||| | | ||||     
T  37871803 atgttgatgcggcaaatttcaaggagcaagtatgttatggggtcagcatgtgtcttagaggggatcaaggggagtacattagggagaagaaatcttggtt 37871902  T
Q  137 caaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaactt 236  Q
     ||||| ||||||||||||||  | |  |||||||||||| |||||||||||| ||| || |||||||   | |||||| |    ||||| |||||| ||    
T  37871903 taaaggcctcccacaacccaacaaggtggaagcaagaggtttaaaagaagcgacaatctgacttggtaaattaaggtttccttctgtgtccatcgaaatt 37872002  T
Q  237 gattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatg 290  Q
    ||||| |||||||||||| ||| ||||||||||||  ||| || ||||||||||    
T  37872003 gattgtaagcaagtggtttacgacatctctagcaatctcaacatcaattccatg 37872056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 257
Target Start/End: Complemental strand, 35051840 - 35051804
Alignment:
Q  221 ggtgtctatcgaacttgattgcaagcaagtggttgac 257  Q
    |||||||||| ||||||||| ||||||||||||||||    
T  35051840 ggtgtctatcaaacttgattacaagcaagtggttgac 35051804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 3 - 321
Target Start/End: Original strand, 4430479 - 4430798
Alignment:
Q  3 tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtg-at 101  Q
    |||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| |||||||||||||||||||||||||||||||||||| ||    
T  4430479 tggattagaccagtagctggggaagtgaagtgcaatgttgatgcgacaatttttaaggatcaaggatgttatggggtcggtatgtgtctaagaggtgtat 4430578  T
Q  102 cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttg 201  Q
    |||  |||||||||| ||||||| ||| | ||||||||| ||||||||||||||||||||||| |||||  |||||||||| |||||||||| |||||||    
T  4430579 cgagaggagttcatttaagcaaatacatcatggtacaaaagtctcccacaacccaaagaagcataagcagaaggtctaaaataagcgataatatggcttg 4430678  T
Q  202 gtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgat 301  Q
     |||||||||| ||| ||  ||||||||||||||  |||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||    
T  4430679 atactatgaggattttcaaagtgtctatcgaactgaattgcaagtaagtggttgacggcatttctagcaacttcagcaccaatttcatgtttggcgcgat 4430778  T
Q  302 tctcaatacttgcaaaactt 321  Q
    | | ||||||||||||||||    
T  4430779 tatgaatacttgcaaaactt 4430798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 3 - 317
Target Start/End: Original strand, 23269746 - 23270059
Alignment:
Q  3 tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatc 102  Q
    ||||||||| |  |||||| |||||||||||| |||||||| ||  |||| ||||||||| |||| ||||||||| | | ||||||  | | ||| ||||    
T  23269746 tggattagatcgttagctgcggaagtgaagtgtaatgtcgacgcgacaatctttaaggatcaaggttgttatgggattgatatgtgcttgacaggggatc 23269845  T
Q  103 gatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttgg 202  Q
    || |||||||||| | ||| |||||||| ||||||| ||||||| | |||||||| || || ||||||||||||||||||||||||| || |||||||||    
T  23269846 gaggggagttcatgagagcgaagacagcttggtacagaggtctctctcaacccaatgaggcggaagcaagaggtctaaaagaagcgagaaagtggcttgg 23269945  T
Q  203 tactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgatt 302  Q
    |||| | || | | |   |||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||| |||||| |||| ||| | ||| |||    
T  23269946 tactttaagatatacatcggtgtctatcgaacttgattgcaagcaa-tggttgacgacatctctagcaatctcaacaccaaatccacgttcgacgctatt 23270044  T
Q  303 ctcaatacttgcaaa 317  Q
    || || |||||||||    
T  23270045 ctgaacacttgcaaa 23270059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 262
Target Start/End: Original strand, 26917294 - 26917333
Alignment:
Q  223 tgtctatcgaacttgattgcaagcaagtggttgacggcat 262  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  26917294 tgtctatcgaacttgattgcaagcaagtggttgacggcat 26917333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 3 - 317
Target Start/End: Complemental strand, 29468749 - 29468435
Alignment:
Q  3 tggattagaccagtagctggggaagtgaagtgcaatgtcgatgcagcaattttt-aaggattaaggatgttatggggtcggtatgtgtctaagaggtgat 101  Q
    ||||||||||| |||||  | || ||| | ||||||||||| |||| ||||||| |||||| || ||||||||||| || | ||||| |||||||| |      
T  29468749 tggattagaccggtagccagtgaggtggattgcaatgtcgacgcagtaattttttaaggatcaatgatgttatggg-tcagaatgtgcctaagaggggtg 29468651  T
Q  102 cgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttg 201  Q
    ||| |||||||||||  ||| |||||| | ||||| ||||||||||||||||| ||||||||  ||||| ||||||||||| |||  |||| ||||||||    
T  29468650 cgaggggagttcattggagcgaagacaacttggtataaaggtctcccacaacctaaagaagcgaaagcacgaggtctaaaaaaagaaataaagtggcttg 29468551  T
Q  202 gtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgat 301  Q
    ||||| |||||||| |   ||| |||||||||||||||||||||||||| |||||  |||||||||||||||| |||||||  |||||||| ||||| ||    
T  29468550 gtactttgaggtttccttcggtatctatcgaacttgattgcaagcaagtagttgattgcatctctagcaactttagcaccaggtccatgttcggcgcaat 29468451  T
Q  302 tctcaatacttgcaaa 317  Q
     || |||| |||||||    
T  29468450 cctgaatatttgcaaa 29468435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 94; Significance: 8e-46; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 21 - 282
Target Start/End: Complemental strand, 40728566 - 40728311
Alignment:
Q  21 ggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatg---ttatggggtcggtatgtgtctaagaggtgatcgatgggagttcatta 117  Q
    ||||| ||||||| |||||| |||||| |||||||||||||| ||||| |   |||||||||||| ||||| ||||||||      ||   |||||||||    
T  40728566 ggggaggtgaagtacaatgtagatgcaacaatttttaaggatcaaggaggcggttatggggtcggaatgtgcctaagagg------at---agttcatta 40728476  T
Q  118 aagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttc 217  Q
     ||| |||||| | ||||| | |||||||| | ||||||||||||||||||||||||||||||| ||||||| ||  ||| |||||||| |||||||| |    
T  40728475 gagccaagacatcttggtatacaggtctccaataacccaaagaagcagaagcaagaggtctaaaggaagcgacaaaatggtttggtactttgaggtttac 40728376  T
Q  218 cagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcacca 282  Q
       | ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||    
T  40728375 ttcgttgtctatcgaacttgattgcaagcaagtatttgacgacatctctagcaacttcagcacca 40728311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 20 - 192
Target Start/End: Original strand, 10785850 - 10786022
Alignment:
Q  20 tggggaagtgaagtgcaatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaa 119  Q
    ||||||||||||||| ||||| ||| || |||||||||||||  |||| ||||||||| ||||||||||| | ||||| |||||| |||||||||||| |    
T  10785850 tggggaagtgaagtgtaatgttgatacaacaatttttaaggaacaaggttgttatgggatcggtatgtgtttgagaggggatcgaggggagttcattaga 10785949  T
Q  120 gcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataa 192  Q
    || |||||| | |||||||||||  |||||||||||||||||| | |||||||||||||||||||| ||||||    
T  10785950 gcgaagacaacttggtacaaaggcatcccacaacccaaagaagtaaaagcaagaggtctaaaagaaacgataa 10786022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 138 - 292
Target Start/End: Original strand, 9252262 - 9252415
Alignment:
Q  138 aaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttg 237  Q
    |||||| |||||||| |||| || |  |||||||||| | |||||||||||||||  ||| ||| || | ||||||||||   | |||||||| ||||||    
T  9252262 aaaggtatcccacaatccaacgaggtggaagcaagagatttaaaagaagcgataaattggtttgataatttgaggttttcttcg-tgtctatcaaacttg 9252360  T
Q  238 attgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtt 292  Q
    |||| |||||||||||||||||||||||||||||  | |||||||||| ||||||    
T  9252361 attgtaagcaagtggttgacggcatctctagcaatctaagcaccaatttcatgtt 9252415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 13019258 - 13019138
Alignment:
Q  72 tatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctcccacaacccaaagaagcagaagcaa 171  Q
    ||||||||||| ||| |||| ||||| ||| || ||||||||||||  || |||||| | ||||  ||||| ||||||||| |||| || ||||||||||    
T  13019258 tatggggtcggcatgcgtcttagaggggattgaggggagttcattagggcgaagacaacttggtttaaaggcctcccacaatccaacgaggcagaagcaa 13019159  T
Q  172 gaggtctaaaagaagcgataa 192  Q
    | ||| |||||||||||||||    
T  13019158 gtggtttaaaagaagcgataa 13019138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 221 - 304
Target Start/End: Complemental strand, 24588736 - 24588653
Alignment:
Q  221 ggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgtttggcgcgattct 304  Q
    |||||||||||||||||||||||||||||||||||||| |||  ||||     ||| ||||||||||||||||||||| |||||    
T  24588736 ggtgtctatcgaacttgattgcaagcaagtggttgacgacataactaggggactcaacaccaattccatgtttggcgctattct 24588653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 49 - 271
Target Start/End: Original strand, 37490630 - 37490852
Alignment:
Q  49 caatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaaagcaaagacagcgtggtacaaaggtctccc 148  Q
    |||||||||| || ||||||||||||||| ||   ||| |||| || | ||||||| |||||| ||||  ||| |||||| | | ||  ||||| || ||    
T  37490630 caatttttaaagagtaaggatgttatgggatcaacatgggtcttagcgatgatcgaggggagtacattggagcgaagacaacttcgtttaaaggccttcc 37490729  T
Q  149 acaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaa 248  Q
    |||| |||| |  |  ||||||| |||| |||||||||||||||  || ||||||| | |||||||| |   | |||||||| |||||||||| ||||||    
T  37490730 acaatccaacgtggaggaagcaaaaggtttaaaagaagcgataaattgtcttggtaatttgaggtttccttcgttgtctatcaaacttgattgtaagcaa 37490829  T
Q  249 gtggttgacggcatctctagcaa 271  Q
     | ||||||| ||||||||||||    
T  37490830 atcgttgacgacatctctagcaa 37490852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 177 - 262
Target Start/End: Original strand, 8294968 - 8295053
Alignment:
Q  177 ctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcat 262  Q
    |||||||| |||||||  |||||||| | ||||||  | || | ||||||||||||||||||||||||||||||| || |||||||    
T  8294968 ctaaaagaggcgataaaatggcttggaagtatgagtctatctaaggtgtctatcgaacttgattgcaagcaagtgatttacggcat 8295053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0305 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0305
Description:

Target: scaffold0305; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 36 - 293
Target Start/End: Complemental strand, 18998 - 18748
Alignment:
Q  36 aatgtcgatgcagcaatttttaaggattaaggatgttatggggtcggtatgtgtctaagaggtgatcgatgggagttcattaa-agcaaagacagcgtgg 134  Q
    ||||||||| || ||||||| ||||| |||||||||| | ||||||  |||||||| ||||| |||| | |||||| ||||   ||| |||||| | |||    
T  18998 aatgtcgatacaacaatttt-aaggagtaaggatgttgttgggtcgacatgtgtcttagaggggatcaaggggagtacattgggagcgaagacaacttgg 18900  T
Q  135 tacaaaggtctcccacaacccaaagaagcagaagcaagaggtctaaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaac 234  Q
    |  |||||||||||||||||||| || ||  ||||||||||| |||||||||||       ||||||||| | | |||||| |   ||||||||| ||||    
T  18899 tttaaaggtctcccacaacccaatgaggcgtaagcaagaggtttaaaagaagcg-------ggcttggtaatttaaggtttccgtcggtgtctattgaac 18807  T
Q  235 ttgattgcaagcaagtggttgacggcatctctagcaacttcagcaccaattccatgttt 293  Q
    ||||||| || ||||||||||||| ||| ||||| ||  ||| ||||||||||| ||||    
T  18806 ttgattgtaaacaagtggttgacgacatatctagaaatctcaacaccaattccacgttt 18748  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 259
Target Start/End: Original strand, 43381799 - 43381836
Alignment:
Q  222 gtgtctatcgaacttgattgcaagcaagtggttgacgg 259  Q
    ||||||||||||||||||||||||||||||||||||||    
T  43381799 gtgtctatcgaacttgattgcaagcaagtggttgacgg 43381836  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 292
Target Start/End: Original strand, 17571196 - 17571309
Alignment:
Q  179 aaaagaagcgataatgtggcttggtactatgaggttttccagggtgtctatcgaacttgattgcaagcaagtggttgacggcatctctagcaacttcagc 278  Q
    ||||||||||||||  |  ||| ||| | ||||||||||   ||| |||||||||||| | || ||| | |||||||||| ||||||||||||  ||| |    
T  17571196 aaaagaagcgataaactaacttagtaatttgaggttttcttcggtctctatcgaacttaactgtaagtatgtggttgacgacatctctagcaatctcaac 17571295  T
Q  279 accaattccatgtt 292  Q
    ||||||| ||||||    
T  17571296 accaattacatgtt 17571309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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