View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_high_16 (Length: 329)
Name: NF3032_high_16
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_16 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 17656663 - 17656351
Alignment:
| Q |
1 |
caagtaagcttggaatagattttaggtccacatctattttatggctaagattttaatacaaatcctgtcaacataatagaaacaaaaaccgtttaacatt |
100 |
Q |
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| T |
17656663 |
caagtaagcttggaatagattttgggtccacatctattttatggctaagattttcatacaaatcctgtcaacataagagaaacaaaaaccgtttaacatt |
17656564 |
T |
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| Q |
101 |
ttgtggtcagacaaatctttatcttgtcaacagaatcaacattgcattattattatcactggcaacaacatgttacttacctttcctatataaaaaagta |
200 |
Q |
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| T |
17656563 |
ttgtggtcagacaaatctttatcttgtcaacagaatcaacattgcattattattatcaccggcaacaacatgttacttacctttcctatataaaaaaata |
17656464 |
T |
|
| Q |
201 |
aaacttgttacgtaccttcatctgtaaccattcttgtctgaattcttcatcattggtcgtgcaatcgttgtcatcacaaaaatatctaaaaggagcccta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17656463 |
aaacttgttacgtaccttcatctgtaaccattcttgtctgaattcttcatcattggtcgtgcaatcgttgtcatcacaaaaatatctaaaaggagcccta |
17656364 |
T |
|
| Q |
301 |
atttgcacattgt |
313 |
Q |
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||||| ||||||| |
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| T |
17656363 |
atttgtacattgt |
17656351 |
T |
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