View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_high_18 (Length: 309)
Name: NF3032_high_18
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_18 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 7 - 309
Target Start/End: Complemental strand, 45411551 - 45411249
Alignment:
| Q |
7 |
gaggagcagcacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgtt |
106 |
Q |
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| T |
45411551 |
gaggatcatcacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgtt |
45411452 |
T |
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| Q |
107 |
actagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagt |
206 |
Q |
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| T |
45411451 |
actagctagaagttagttggataaggatgagatagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttagttagaagt |
45411352 |
T |
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| Q |
207 |
tttgatttgtgtatataagttatgcattgcactgagaaaatgtatcatataagttgaataaaatttccacaatcctttttccacaaaattaagcaaccta |
306 |
Q |
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|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45411351 |
tttgatttgtgtatataaattatgtattgcactgagaaaatgtatcatataagttgaataaaatttccacaatcctttttccacaaaattaagcaactta |
45411252 |
T |
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| Q |
307 |
tcc |
309 |
Q |
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||| |
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| T |
45411251 |
tcc |
45411249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 27355618 - 27355911
Alignment:
| Q |
16 |
cacagagaatgcattaatgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
115 |
Q |
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| T |
27355618 |
cacagagaatgcattagtgtagtaatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctag |
27355717 |
T |
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| Q |
116 |
aagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttg |
215 |
Q |
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| T |
27355718 |
aagttagttggataaggatgagttagttacttaaagattaactcaccatatggtttacttggtggtcaagaaaccatggttagttagaagttttgatttg |
27355817 |
T |
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| Q |
216 |
tgtatataagttatgcattgcactgagaaaatgtatcatataagttgaataaaatttccacaatcctttttccacaaaattaagcaacctatcc |
309 |
Q |
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| T |
27355818 |
tgtatataagttatgtattgcacttagaaaatgtatcatataagttgaataaaatttccagaatcctttttccacaaaattaagcaacttatcc |
27355911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 9e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 91 - 249
Target Start/End: Original strand, 7552123 - 7552281
Alignment:
| Q |
91 |
ttattattagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatc |
190 |
Q |
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||||||||| |||||| | |||||||||| || |||||||||||||||||||| ||||| |||||||||| ||| |||||||| ||||||||| | |
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| T |
7552123 |
ttattattaaattgttattggctagaagttggtcggataaggatgagttagttagttaaaaattaactcaccatagaatttacttgcgagtcaagtaacc |
7552222 |
T |
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| Q |
191 |
atggttaggtagaagttttgatttgtgtatataagttatgcattgcactgagaaaatgt |
249 |
Q |
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| T |
7552223 |
atagttagttagaagttttgatttgtgtatataagtgatgtattgtattgagaatatgt |
7552281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 8850027 - 8849968
Alignment:
| Q |
99 |
agtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaact |
158 |
Q |
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| T |
8850027 |
agttagttactagctaaaagttagttggataagattgagttagttagtttaagattaact |
8849968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 38 - 225
Target Start/End: Complemental strand, 14806416 - 14806232
Alignment:
| Q |
38 |
taatctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagttagttggataaggatgag |
137 |
Q |
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||||||| ||||||||||| |||||| | ||||||||||||| | ||| |||||| | ||||||||| ||||||||||||||||||||||| || |
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| T |
14806416 |
taatctaatgtatagttgttatgatgtacatactttagattaaaacaagtttgttaaaa---gtttgttacaggctagaagttagttggataaggacgaa |
14806320 |
T |
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| Q |
138 |
ttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggtagaagttttgatttgtgtatataag |
225 |
Q |
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| T |
14806319 |
ttagttagttagagattaactcactatagatttaatttggtggacaaacaaccatagttagtcagaagttttaatttgtgtatataag |
14806232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 10281049 - 10280970
Alignment:
| Q |
96 |
attagtttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttactt |
175 |
Q |
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| T |
10281049 |
attagtttgtgactatctagaagttagttagagaaggatgagttagttggttagagattaactcaccttagggtttactt |
10280970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 101 - 223
Target Start/End: Original strand, 55212258 - 55212377
Alignment:
| Q |
101 |
tttgttactagctagaagttagttggataaggatgagttagttacttaaagattaactcacgatatggtttacttggtggtcaagtaatcatggttaggt |
200 |
Q |
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||||||||||| |||||||| ||| |||||||||||||||| ||| |||||| | | |||||||||||||||| ||||||||| |||| ||| | |
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| T |
55212258 |
tttgttactagatagaagttggtttgataaggatgagttag----ttagagattagcaaatcatatggtttacttggtagtcaagtaaccatgattaatt |
55212353 |
T |
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| Q |
201 |
agaagtttt-gatttgtgtatata |
223 |
Q |
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| T |
55212354 |
ataagttttcgatttgtgtatata |
55212377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 121
Target Start/End: Complemental strand, 31608605 - 31608527
Alignment:
| Q |
40 |
atctagtgtatagttgtaatgatgcatatactttagattagcataagcttgttattattagtttgttactagctagaagtta |
121 |
Q |
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||||||||||||||||| ||||| ||||| ||||||||||| || ||| ||||||||||||| |||||||||||||| |
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| T |
31608605 |
atctagtgtatagttgttttgatgtatatatattagattagcacaaatttg---ttattagtttgttcctagctagaagtta |
31608527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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