View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_high_21 (Length: 295)
Name: NF3032_high_21
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_21 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 31915771 - 31916050
Alignment:
| Q |
1 |
caaaattgagtgaaaatgaagggactaatcacatatctaagctttttacatattagatgtacttgcgccagtattgtctcttcttaacaaacattaaaat |
100 |
Q |
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| T |
31915771 |
caaaattgagtaaaaatgaagggactaatcacaaatttaaact------atattagatgtacttgcgccaatattgtctcttcttaacaaacattaaaat |
31915864 |
T |
|
| Q |
101 |
atagttaacgaaaaaag-----aagtttatgatatttatcaaatatcacgtacaaaacaatattgttnnnnnnngatatgttgttttagaaagtaact-a |
194 |
Q |
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| T |
31915865 |
atagttaacgaaaaaagaaagaaagtttatgatatttatcaaatatcacgtacaaaacaatattattaaaaaaagatatgttgttttagaaagtaactaa |
31915964 |
T |
|
| Q |
195 |
aattgaacattttttaac--ttgatgataaatactcataaattctttggacacttaaccggactaaaatgtggttaatagagtgtt |
278 |
Q |
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|||||||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
31915965 |
aattgaacattttttaacctttgaagataaatactcataaaaaatttggacacttaaccggactaaaatgtggttaatagagtgtt |
31916050 |
T |
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