View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3032_high_23 (Length: 287)

Name: NF3032_high_23
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3032_high_23
NF3032_high_23
[»] chr2 (2 HSPs)
chr2 (18-287)||(27355895-27356160)
chr2 (18-287)||(45411007-45411265)


Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 27356160 - 27355895
Alignment:
Q  18 ctttcattgttttggcgccaaagatgcatgttcctaacatgattatttttcttcaacatttcattttcataataaatagtcattctttttgcaatacagt 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  27356160 ctttcattgttttggcgccaaagttgcatgttcctaacatgattatttttcttcaacatttcattttcataataaatagtcattctttttgcactacagt 27356061  T
Q  118 tagaatgtgtcgtctttgcctattacttacttactcataaattctctactccatgtttagtgccttatttcaaggaaggaactaaacgctaataggcaat 217  Q
    ||||||||||||| ||||||||||||| |||    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27356060 tagaatgtgtcgtttttgcctattactgact----cataaattctttactccatgtttagtgccttatttcaaggaaggaactaaacgctaataggcaat 27355965  T
Q  218 ttacacatgataaataatcatcaatttacaagattaataggcaatttatgttgggataggttgcttaatt 287  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  27355964 ttacacatgataaataatcatcaatttacaagattaataggcaatttatgttgggataagttgcttaatt 27355895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 45411007 - 45411265
Alignment:
Q  18 ctttcattgttttggcgccaaagatgcatgttcctaacatgattatttttcttcaacatttcattttcataataaatagtcattctttttgcaatacagt 117  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45411007 ctttcattgttttggcgccaaagttgcatgttcctaacatgattatttttcttcaacatttcattttcataataaatagtcattctttttgcaatacagt 45411106  T
Q  118 tagaatgtgtcgtctttgcctattac-ttactt-actcataaattctctactccatgtttagtgccttatttcaaggaaggaactaaacgctaataggca 215  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||         
T  45411107 tagaatgtgtcgtctttgcctattactttacttaactcataaattctctactccatgtttagtgccttatttcaaggaaggaactaaacgcgaat----- 45411201  T
Q  216 atttacacatgataaataatcatcaatttacaagattaataggcaatttatgttgggataggttgcttaatt 287  Q
            |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45411202 --------atgataaataatcatcaatttacaagattaataggcaatttatgttgggataagttgcttaatt 45411265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University