View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_high_36 (Length: 235)
Name: NF3032_high_36
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_36 |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 42921165 - 42921332
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42921165 |
aatatgagaagtaattttgtctttgatttgtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
42921264 |
T |
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| Q |
114 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42921265 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
42921332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 45288822 - 45288655
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
113 |
Q |
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|||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45288822 |
aatatgagaagtgattttgtctttgatttatgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
45288723 |
T |
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| Q |
114 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45288722 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
45288655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 10 - 179
Target Start/End: Original strand, 3752375 - 3752544
Alignment:
| Q |
10 |
gaagaatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtg |
109 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
3752375 |
gaagaatatgagaagtgattttgtctttaatttgtgatgacacaattagaatgaataatttttagttgaatgtaacttctacctacacaaggaatttgtg |
3752474 |
T |
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| Q |
110 |
acgggttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggactt |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3752475 |
acgggttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggactt |
3752544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 19251108 - 19251275
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
113 |
Q |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19251108 |
aatatgagaagtgattttgtctttgatttgtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
19251207 |
T |
|
| Q |
114 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19251208 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcatctatcacaacagggacttgc |
19251275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 19324292 - 19324459
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
113 |
Q |
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|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19324292 |
aatatgagaagtgattttgtctttgatttgtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
19324391 |
T |
|
| Q |
114 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
19324392 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcatctatcacaacagggacttgc |
19324459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 156; Significance: 5e-83; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 34324371 - 34324538
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
113 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34324371 |
aatatgagaagtgattttgtctttgatttgtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
34324470 |
T |
|
| Q |
114 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34324471 |
gttcaagaataaccaaggaaagtattaacataaataattagttatcaattatcacaacagggacttgc |
34324538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 22977861 - 22977694
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
113 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22977861 |
aatatgagaagtgattttgcctttgatttgtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
22977762 |
T |
|
| Q |
114 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
22977761 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacggggacttgc |
22977694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 181
Target Start/End: Original strand, 23810541 - 23810708
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
113 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23810541 |
aatatgagaagtgattttgcctttgatttgtgatgacacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
23810640 |
T |
|
| Q |
114 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
23810641 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacggggacttgc |
23810708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 2627186 - 2627115
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaac |
85 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
2627186 |
aatatgagaagtgattttgcctttgatttgtgatgacacaattagaatgaataatgtttagttgaatgtaac |
2627115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 139 - 181
Target Start/End: Complemental strand, 2627118 - 2627076
Alignment:
| Q |
139 |
taacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2627118 |
taacataaataattagttatcaattatcacaacagggacttgc |
2627076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 47389580 - 47389413
Alignment:
| Q |
14 |
aatatgagaagtaattttgtctttgatttgtgatgatacaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
113 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47389580 |
aatattagaagtgattttgtctttgatttgtgatgactcaattagaatgaataatgtttagttgaatgtaacttctacctacacaaggaatttgtgacgg |
47389481 |
T |
|
| Q |
114 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47389480 |
gttcaagaataaccaaggcaagtattaacataaataattagttatcaattatcacaacagggacttgc |
47389413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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