View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3032_high_4 (Length: 589)
Name: NF3032_high_4
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 535; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 6 - 573
Target Start/End: Original strand, 37318634 - 37319197
Alignment:
| Q |
6 |
aggagcagagattattcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcga |
105 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37318634 |
aggagaagagattattcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcga |
37318733 |
T |
|
| Q |
106 |
ggtgttcttaggctcccaacattggtgattgacgacaccacagaatacatgctccttaatctcattgcactcgagcgactccatgttggagcaggtaatc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37318734 |
ggtgttcttaggctcccaacattggtgattgacgacaccacagaatacatgctccttaatctcattgcactcgagcgactccatgttggagcaggtaatc |
37318833 |
T |
|
| Q |
206 |
cgtcccaacaaatatgtaggccaagatctaaatttgaagtgacgcatttgaaaacataatcacaaaaataaagacttgttaagaataggtaggtatcaaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
37318834 |
cgtcccaacaaatatgtaggccaagatctaaatttgaagtgacacatttgaaaacataatcacaaaaataaagacttgttaagaa----taggtatcaaa |
37318929 |
T |
|
| Q |
306 |
tagatttacatctttgattaatttttatagaatcaattagtcacaaaagtaacgcctaaaattaatactatgagaactaaatttgagggctaaatgagtt |
405 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37318930 |
tagatttacatctttgattaatttttatagaatcaattagtcacaaaagtaacgcgtaaaattaatactatgagaactaaatttgagggctaaatgagtt |
37319029 |
T |
|
| Q |
406 |
gctttattatgcaggtaacgaggtaacatcgtttatattctttatggacaccatcatcgacagtaacatggatgttgcacttcttaaccgaagtgggatc |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
37319030 |
gctttattatgcaggtaacgaggtaacatcgtttatattctttatggacaccatcatcgacagtaacgtggatgttgcacttcttaaccgaagtgggatc |
37319129 |
T |
|
| Q |
506 |
ataatcaatgctcttggaagcgataaagttgtttccaaattgtttaactcgttgtctaaagacataac |
573 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37319130 |
ataatcaatgctcttggaagcgataaagttgtttccaaattgtttaactcgttgtctaaagacataac |
37319197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 21 - 173
Target Start/End: Original strand, 37283115 - 37283267
Alignment:
| Q |
21 |
tcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcgaggtgttcttaggctc |
120 |
Q |
| |
|
|||||||||| | ||||| | |||||||||||| | ||||||| ||||||||| ||||||| ||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
37283115 |
tcgatctgcaatggagctgaaagaggctggaatcagcttcaagaaaagcaaaacaaggagcctcaaagatgtttccttcaatcgaggtgttcttaggctc |
37283214 |
T |
|
| Q |
121 |
ccaacattggtgattgacgacaccacagaatacatgctccttaatctcattgc |
173 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| |||| ||||||| |||||||| |
|
|
| T |
37283215 |
ccaaaattggtggttgacgaccacacagaatgcatgttccttaacctcattgc |
37283267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 203
Target Start/End: Original strand, 37244651 - 37244838
Alignment:
| Q |
16 |
attattcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcgaggtgttctta |
115 |
Q |
| |
|
||||||||||||||| |||||| || ||||||||| | || ||||||| |||| | | ||||||| ||||| ||||| ||| ||||||||||||||| |
|
|
| T |
37244651 |
attattcgatctgcaagagagctccaagaggctggagtacgcttcaagaaaagcgattcaaggagcctcaaagacgtttccttcaatcgaggtgttctta |
37244750 |
T |
|
| Q |
116 |
ggctcccaacattggtgattgacgacaccacagaatacatgctccttaatctcattgcactcgagcgactccatgttggagcaggtaa |
203 |
Q |
| |
|
||||||| | || | || |||| |||| ||||||| ||||||||||||||||| |||| || |||||||||||||| ||||| |
|
|
| T |
37244751 |
ggctccctgccgtgaaattagatgacagcacaaaatacattttccttaatctcattgcattcgaacgtctccatgttggagctggtaa |
37244838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 419 - 555
Target Start/End: Original strand, 37244834 - 37244970
Alignment:
| Q |
419 |
ggtaacgaggtaacatcgtttatattctttatggacaccatcatcgacagtaacatggatgttgcacttcttaaccgaagtgggatcataatcaatgctc |
518 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||| | ||| ||| || |||||| ||||||||||| ||||||| |||| |
|
|
| T |
37244834 |
ggtaacgaggtaacatcttttatatgttttatggacaccatcatcgacactgctcaggacgttccatttcttagtagaagtgggatcctaatcaacgctc |
37244933 |
T |
|
| Q |
519 |
ttggaagcgataaagttgtttccaaattgtttaactc |
555 |
Q |
| |
|
|||| | ||||||| |||| |||||||||| ||||| |
|
|
| T |
37244934 |
ttgggaacgataaacttgtggccaaattgttcaactc |
37244970 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 37305375 - 37305480
Alignment:
| Q |
23 |
gatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcgaggtgttcttaggctccc |
122 |
Q |
| |
|
|||||||| ||||||| || || ||||||||| | |||| || ||||||||| || ||| ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
37305375 |
gatctgcaatagagctccatgaagctggaatcagcttcatgaaaagcaaaacaaagaaccttaaagatgtttccttcaatcgaggtgttcttaggctccc |
37305474 |
T |
|
| Q |
123 |
aacatt |
128 |
Q |
| |
|
||||| |
|
|
| T |
37305475 |
cacatt |
37305480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 422 - 571
Target Start/End: Original strand, 37965502 - 37965651
Alignment:
| Q |
422 |
aacgaggtaacatcgtttatattctttatggacaccatcatcgacagtaacatggatgttgcacttcttaaccgaagtgggatcataatcaatgctcttg |
521 |
Q |
| |
|
|||||| | |||||||||||||| || || | ||||||||||||| || ||||||||| || |||| | || || ||||||| |||||||| ||||| |
|
|
| T |
37965502 |
aacgagatcacatcgtttatatttttaataggcaccatcatcgacggtgctatggatgtttcaattctgagccaaaatgggatcctaatcaatattcttg |
37965601 |
T |
|
| Q |
522 |
gaagcgataaagttgtttccaaattgtttaactcgttgtctaaagacata |
571 |
Q |
| |
|
| | ||| |||||||| |||| ||||| |||||| |||| ||||||||| |
|
|
| T |
37965602 |
ggaacgaccaagttgttgccaacttgttcaactcgatgtccaaagacata |
37965651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 19 - 117
Target Start/End: Original strand, 37965319 - 37965417
Alignment:
| Q |
19 |
attcgatctgcagtagagcttcacgaggctggaatccgattcaagataagcaaaacgtggagcctaaaagatgtttcattcgatcgaggtgttcttagg |
117 |
Q |
| |
|
|||||||||||| ||| || || || | ||||||| | ||||||| ||||||||| ||| || |||||| |||| ||||||||||||||||||||| |
|
|
| T |
37965319 |
attcgatctgcaatagcactccaagaagttggaatcagcttcaagaaaagcaaaacaaagagtctcaaagatttttccttcgatcgaggtgttcttagg |
37965417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University