View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3032_high_40 (Length: 226)
Name: NF3032_high_40
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_40 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 42921184 - 42920963
Alignment:
| Q |
1 |
acaaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
42921184 |
acaaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcgcaaccaattaaaagtgttcaaattatccaattcaat |
42921085 |
T |
|
| Q |
101 |
gtaaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtctgtttaa--------gagtgcctttggaaagtgt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| |
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|
| T |
42921084 |
gtaaaaggactaacgagattatattttaaatggttatgaacttcaaaataaatcccacctagggtctgtttaagagtttaagagtgcctttggaaagtgt |
42920985 |
T |
|
| Q |
193 |
ttttcctcaaaaggactgatga |
214 |
Q |
| |
|
|||| |||||||||||| |||| |
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|
| T |
42920984 |
tttttctcaaaaggactaatga |
42920963 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 139; Significance: 7e-73; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 214
Target Start/End: Original strand, 22977843 - 22978065
Alignment:
| Q |
2 |
caaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaatg |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
22977843 |
caaaatcacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcgcaaccaattaaaagtgttcaaattatccaattcaatg |
22977942 |
T |
|
| Q |
102 |
taaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtct--------gtttaagagtgcctttggaaagtg-- |
191 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| || |||| |
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| T |
22977943 |
taaaaggactaataaggttatattttaaatggttatgaacttcaaaataaattccacctagggtctttttcggagtttaagagtgcctttagagagtgtt |
22978042 |
T |
|
| Q |
192 |
tttttcctcaaaaggactgatga |
214 |
Q |
| |
|
||||| |||||||||||| |||| |
|
|
| T |
22978043 |
ttttttctcaaaaggactaatga |
22978065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 214
Target Start/End: Complemental strand, 23810559 - 23810337
Alignment:
| Q |
2 |
caaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaatg |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
23810559 |
caaaatcacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcgcaaccaattaaaagtgttcaaattatccaattcaatg |
23810460 |
T |
|
| Q |
102 |
taaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtct--------gtttaagagtgcctttggaaagtg-- |
191 |
Q |
| |
|
|||||||||||| || |||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||||||| || |||| |
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|
| T |
23810459 |
taaaaggactaataaggttatattttaaatggttatgaacttcaaaataaattccacctagggtctttttcggagtttaagagtgcctttagagagtgtt |
23810360 |
T |
|
| Q |
192 |
tttttcctcaaaaggactgatga |
214 |
Q |
| |
|
||||| |||||||||||| |||| |
|
|
| T |
23810359 |
ttttttctcaaaaggactaatga |
23810337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 2 - 167
Target Start/End: Original strand, 2627168 - 2627333
Alignment:
| Q |
2 |
caaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaatg |
101 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
2627168 |
caaaatcacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcgcaaccaattaaaagtgttcaaattatccaattcaatg |
2627267 |
T |
|
| Q |
102 |
taaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtct |
167 |
Q |
| |
|
|||||||||||| ||| |||||||||||||| ||||||||||||||||||| | |||||||||||| |
|
|
| T |
2627268 |
taaaaggactaatgaggttatattttaaatggttatgaacttcaaaataaaatccacctagggtct |
2627333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 34324390 - 34324220
Alignment:
| Q |
1 |
acaaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||| |||||||| |
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|
| T |
34324390 |
acaaaatcacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcgcaactaattaaaagtgctcaaattatcgaattcaat |
34324291 |
T |
|
| Q |
101 |
gtaaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtctgttt |
171 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||||||||||||||||| |||||||||| ||||| |
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|
| T |
34324290 |
gtaaaaggactaatgaggttatattttaaatggttatgaacttcaaaataaatcccacctagggtatgttt |
34324220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 19251127 - 19250957
Alignment:
| Q |
1 |
acaaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
19251127 |
acaaaatcacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcacaaccaattaaaagtgttcaaattatccaattcaat |
19251028 |
T |
|
| Q |
101 |
gtaaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtctgttt |
171 |
Q |
| |
|
||||||||||| | ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19251027 |
gtaaaaggactgatgaggttatattttaaatggttatgaacttcaaaataaatcccacctagggtctgttt |
19250957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 19324311 - 19324141
Alignment:
| Q |
1 |
acaaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
19324311 |
acaaaatcacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcacaaccaattaaaagtgttcaaattatccaattcaat |
19324212 |
T |
|
| Q |
101 |
gtaaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtctgttt |
171 |
Q |
| |
|
||||||||||| | ||| |||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19324211 |
gtaaaaggactgatgaggttatattttaaatggttatgaacttcaaaataaatcccacctagggtctgttt |
19324141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 45288803 - 45288973
Alignment:
| Q |
1 |
acaaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaat |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
45288803 |
acaaaatcacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcgcaaccaattaaaagtgttcaaattatccaattcaat |
45288902 |
T |
|
| Q |
101 |
gtaaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtctgttt |
171 |
Q |
| |
|
||||||||||||| ||| |||||||||||||| |||||||||||||||||||| ||| ||||| |||||| |
|
|
| T |
45288903 |
gtaaaaggactaatgaggttatattttaaatggttatgaacttcaaaataaatcccacatagggactgttt |
45288973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 153
Target Start/End: Complemental strand, 3752398 - 3752246
Alignment:
| Q |
1 |
acaaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaat |
100 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| | | ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3752398 |
acaaaatcacttctcatattcttcagtagcatatatgagcatatcttaaatgcatgtacatgcgcaaccaattaaaagtgttcaaattatccaatttaat |
3752299 |
T |
|
| Q |
101 |
gtaaaaggactaacgagattatattttaaatgattatgaacttcaaaataaat |
153 |
Q |
| |
|
|||||| |||||| ||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
3752298 |
gtaaaatgactaatgaggttatattttaaatggttatgaacttcaaaataaat |
3752246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 47389561 - 47389731
Alignment:
| Q |
1 |
acaaaattacttctcatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgtgcaaccaattaaaagtgttcaaattatccaattcaat |
100 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
|
|
| T |
47389561 |
acaaaatcacttctaatattgttcagtagcatatatgagcatctttgaaatgcatgtacatgcacaaccaattaaaagtgtttcaattatccaattcaat |
47389660 |
T |
|
| Q |
101 |
gtaaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtctgttt |
171 |
Q |
| |
|
||||||||||||| | ||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||| |
|
|
| T |
47389661 |
gtaaaaggactaatgcgattatattttcaatggttatgaacttcaaaataaattctacctaggatctgttt |
47389731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 171
Target Start/End: Complemental strand, 41677735 - 41677641
Alignment:
| Q |
78 |
gtgttcaaattatccaattcaatgt-aaaaggactaacgagattatattttaaatgattatgaacttcaaaataaatttcacctagggtctgttt |
171 |
Q |
| |
|
|||||||||| ||||| |||||||| |||||| | || ||||| |||||||| ||| ||| |||||||||| ||||| ||||||||||||||| |
|
|
| T |
41677735 |
gtgttcaaataatccatttcaatgtgaaaagggccaatgagatcatattttatatggttaagaacttcaaagtaaatccaacctagggtctgttt |
41677641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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