View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_high_41 (Length: 226)
Name: NF3032_high_41
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_41 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 7 - 194
Target Start/End: Original strand, 40671195 - 40671382
Alignment:
| Q |
7 |
cataccttaatgactacttgttgccctttctccgctctataaaccggtttaaggttattctcaatggaggcgatgcggccaatatcaatgttcatttgtg |
106 |
Q |
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|||||||||||||||||||| |||||||||| |||| ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
40671195 |
cataccttaatgactacttgctgccctttcttcgctttatcaaccggtttaaggttattctcaatggaggcaatgcggccaatatcaatgttcttttgtg |
40671294 |
T |
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| Q |
107 |
aaggaatacaaattggattgccaatctgtcaagtggacaatatcagtgcaagtttaaagaaaccaaacaaattttgtgcattgcacac |
194 |
Q |
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| T |
40671295 |
aaggaatacaaattggattgccaatctgtcaagcagacaatatcagtgcaagtttaaagaaaccaaacaaattttgtgcatttcacac |
40671382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 5 - 210
Target Start/End: Complemental strand, 3016172 - 3015954
Alignment:
| Q |
5 |
cacataccttaatgactacttgttgccctttctccgctctataaaccggtttaaggttattctcaatggaggcgatgcggccaatatcaatgttcatttg |
104 |
Q |
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| T |
3016172 |
cacataccttaatgaatacttgttgccctttctccgctctataaaccggtttaaggttattctcaatggaggcgatgcggccaatatcaatgttcatttg |
3016073 |
T |
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| Q |
105 |
tgaaggaatacaaattggattgccaatctgtcaagtggacaatatcagtgca----------agtttaa---agaaaccaaacaaattttgtgcattgca |
191 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| || |||||||||||||||||||||||||||| |
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| T |
3016072 |
tgaaggaatacaaattggatttccaatctgtcaagtggacaatattagtgcaaacaaatattagtacaaattagaaaccaaacaaattttgtgcattgca |
3015973 |
T |
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| Q |
192 |
cactcattacgacgaccat |
210 |
Q |
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| T |
3015972 |
cgctcattacgacgaccat |
3015954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 7 - 194
Target Start/End: Complemental strand, 44608155 - 44607968
Alignment:
| Q |
7 |
cataccttaatgactacttgttgccctttctccgctctataaaccggtttaaggttattctcaatggaggcgatgcggccaatatcaatgttcatttgtg |
106 |
Q |
| |
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|||||||||||| ||||||| |||||||| ||| | || |||| ||||| |||| ||| ||||||| |||||| |||||||||||| |||| | |
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| T |
44608155 |
cataccttaatggctacttgctgcccttttgtcgcacgatcaaccagtttatcgttaatcttaatggagttgatgcgaccaatatcaatgaaattttggg |
44608056 |
T |
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| Q |
107 |
aaggaatacaaattggattgccaatctgtcaagtggacaatatcagtgcaagtttaaagaaaccaaacaaattttgtgcattgcacac |
194 |
Q |
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||| |||||||||||| | |||||||| ||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
44608055 |
tagggatacaaattggagttccaatctgccaagtagacaatatcagtgcaagttcaaagaaaccaaacaaattttatgcattgcacac |
44607968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 5 - 179
Target Start/End: Complemental strand, 44629892 - 44629717
Alignment:
| Q |
5 |
cacataccttaatgactacttgttgccctttctccgctctataaaccggtttaaggttattctcaatggaggcgatgcggccaatatcaatgttcatttg |
104 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||| || |||||||||| ||||||||||||||||||| ||||| |||||||||||| | ||| |
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| T |
44629892 |
cacataccttaatggctactttctgccctttcttcgcataatcaaccggtttatggttattctcaatggaggcaatgcgaccaatatcaatgaactcttg |
44629793 |
T |
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| Q |
105 |
tgaaggaatacaaattggattgccaatctgtcaagtggacaatatca-gtgcaagtttaaagaaaccaaacaaatt |
179 |
Q |
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||||| |||||||||||| | ||||||||| |||| |||||||||| | ||||| | |||||||||||||||||| |
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| T |
44629792 |
ggaagggatacaaattggagttccaatctgtgaagtagacaatatcaggagcaagctaaaagaaaccaaacaaatt |
44629717 |
T |
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