View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_high_47 (Length: 204)
Name: NF3032_high_47
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_high_47 |
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| [»] scaffold0236 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 155; Significance: 2e-82; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 43686363 - 43686193
Alignment:
| Q |
19 |
gagcaagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaacca |
118 |
Q |
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| T |
43686363 |
gagcaagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaaacca |
43686264 |
T |
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| Q |
119 |
actttccaaccaagatgctcttggatatatactattccaaatagagctgctatgacagctatagttgtgga |
189 |
Q |
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| T |
43686263 |
attctccaaccaagatgatcttggatatatactattccaaatagagctgctatgacagctatagttgtgga |
43686193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 43713687 - 43713522
Alignment:
| Q |
19 |
gagcaagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaacca |
118 |
Q |
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| T |
43713687 |
gagcaagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaagacagtggatataagcatgagtgctgctggaacaccaaaacca |
43713588 |
T |
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| Q |
119 |
actttccaaccaagatgctcttggatatatactattccaaatagagctgctatgacagctatagtt |
184 |
Q |
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| T |
43713587 |
attctccaaccaagatgatcttggatatatactattccggtgagagctattatgacagctatagtt |
43713522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 23 - 187
Target Start/End: Complemental strand, 43702859 - 43702695
Alignment:
| Q |
23 |
aagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaactt |
122 |
Q |
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| T |
43702859 |
aagctggttttttgtttaattttcacataaagaggagaagcaagaaagaataagacagtggatataagcatgagtattgctggaacaccaaaaccaactt |
43702760 |
T |
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| Q |
123 |
tccaaccaagatgctcttggatatatactattccaaatagagctgctatgacagctatagttgtg |
187 |
Q |
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| T |
43702759 |
tccaaccaagatgatcttggatatatactattccagtgagagctattatgacagctatagttgtg |
43702695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 22 - 150
Target Start/End: Complemental strand, 43727586 - 43727458
Alignment:
| Q |
22 |
caagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaact |
121 |
Q |
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| T |
43727586 |
caagctggttctttttgtgatcttgacataaagaggagaagcaagaaagaaacagatagtagataaaagcatgagtgctgctggaacaccaaaaccaatt |
43727487 |
T |
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| Q |
122 |
ttccaaccaagatgctcttggatatatac |
150 |
Q |
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| T |
43727486 |
ttccaaccaagatgctcttggatatatac |
43727458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 101 - 147
Target Start/End: Complemental strand, 43734977 - 43734931
Alignment:
| Q |
101 |
gctggaacaccaaaaccaactttccaaccaagatgctcttggatata |
147 |
Q |
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| T |
43734977 |
gctggaacaccaaaacctagtttccaaccaagatgatcttggatata |
43734931 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0236 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 22 - 154
Target Start/End: Original strand, 24336 - 24468
Alignment:
| Q |
22 |
caagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaact |
121 |
Q |
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|||| ||||||||| | ||| || |||||||| ||||||||||||||||| || | ||||||| || |||||||||||||||||| |||||||||| | |
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| T |
24336 |
caagttggttcttttttgaatctttacataaagaggagaagcaagaaagaataacaatgtggataaaaacatgagtgctgctggaactccaaaaccaatt |
24435 |
T |
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| Q |
122 |
ttccaaccaagatgctcttggatatatactatt |
154 |
Q |
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| T |
24436 |
ttccaaccaagatgatcttggatatatactatt |
24468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 22 - 154
Target Start/End: Complemental strand, 25273386 - 25273254
Alignment:
| Q |
22 |
caagctggttctttgtgtaattttcacataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaact |
121 |
Q |
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|||| ||||||||| | ||| || |||||||| ||||||||||||||||| || | ||||| | || |||||||||||||||||| |||||||||| | |
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| T |
25273386 |
caagttggttcttttttgaatctttacataaagaggagaagcaagaaagaataacagtgtggacaaaaacatgagtgctgctggaactccaaaaccaatt |
25273287 |
T |
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| Q |
122 |
ttccaaccaagatgctcttggatatatactatt |
154 |
Q |
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|||||||||||||| |||||||||||||||||| |
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| T |
25273286 |
ttccaaccaagatgatcttggatatatactatt |
25273254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 2689935 - 2689826
Alignment:
| Q |
47 |
acataaagtggagaagcaagaaagaacaatacagtggatataagcatgagtgctgctggaacaccaaaaccaactttccaaccaagatgctcttggatat |
146 |
Q |
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||||||||||||||||||||||| || || | |||||| | | ||| ||||||||||||||||||||||||| |||||| |||||||| |||||||||| |
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| T |
2689935 |
acataaagtggagaagcaagaaaaaagaagaaagtggaaaagaacataagtgctgctggaacaccaaaaccaagtttccatccaagatgatcttggatat |
2689836 |
T |
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| Q |
147 |
atactattcc |
156 |
Q |
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|||||||||| |
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| T |
2689835 |
atactattcc |
2689826 |
T |
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