View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_10 (Length: 387)
Name: NF3032_low_10
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 171
Target Start/End: Original strand, 25300101 - 25300251
Alignment:
| Q |
17 |
cagagatcccttgttgaattacgatttcaatccagttttgactttaaattaagaacaatgaaattcaaaccaaattgattaattaattgagaaacatcta |
116 |
Q |
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| T |
25300101 |
cagagatcccttgttgaattacgatttcaatcaaattttgacttaaaattaaggacaatgaaattcaaaccaaattg----attaattgagaaacattta |
25300196 |
T |
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| Q |
117 |
catgaacactaactaacgaattacaacattaatatcgaattgaacttataaagta |
171 |
Q |
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| T |
25300197 |
catgaacactaactaacgaattgcaacattaatatcgaattgaacttatgaagta |
25300251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 265 - 355
Target Start/End: Original strand, 25300291 - 25300382
Alignment:
| Q |
265 |
aattgaacaaaaaatacacaaaataaa-gggaatcgtcggctatctattctattcattcatcaaaattctgaatcacaagtaattcacataa |
355 |
Q |
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||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
25300291 |
aattgaacaaaaaatacacaaaataaaagggaattgtcggctatctattctattcattcatcaaaattctaaaccacaagtaattcacataa |
25300382 |
T |
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