View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_11 (Length: 384)
Name: NF3032_low_11
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 162; Significance: 2e-86; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 10 - 199
Target Start/End: Complemental strand, 29160098 - 29159909
Alignment:
| Q |
10 |
aagaatatggtcagtaaagtgcaaccaaccactggtaaaacttaagttcaaaagagaatgaaaaccaagtaagaaaatttgacaaagtcacgtaaagtta |
109 |
Q |
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| T |
29160098 |
aagaaaatggtcagtaaagtgcaaccaaacaccggtaaaacttaagttcaaaagtgaatgaaaaccaagtaagaatatttgacaaagtcacataaagtta |
29159999 |
T |
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| Q |
110 |
ccagggaaataaagatataatcaagtaaattagtagaaagtaatttgacataaaaggaaaattgatgaaattagcagttcaacaagagtg |
199 |
Q |
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| T |
29159998 |
ccagggaaataaagatataatcaagtaaattagtagaaagtaatttgacatgaaaggaaaattgatgaaattagcagttcaacaagagtg |
29159909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 246 - 365
Target Start/End: Complemental strand, 29159862 - 29159743
Alignment:
| Q |
246 |
caagagtgaacaatgtctatttctggcatcctaggttctcttagaatgaactcacttggactggtccaagtgaattgcaaatgacatttgacttaggatt |
345 |
Q |
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| T |
29159862 |
caagagtgaacaatgtctatttctggcatcctaggctctcttagaatgaactcacttggactggtccaagtgaattgcaaatgacatttgacttaggatt |
29159763 |
T |
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| Q |
346 |
ataatggtttagttcacgta |
365 |
Q |
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| T |
29159762 |
ataatggtttagttcacgta |
29159743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 29150316 - 29150250
Alignment:
| Q |
16 |
atggtcagtaaagtgcaaccaaccactggtaaaacttaagttcaaaagagaatgaaaaccaagtaag |
82 |
Q |
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| T |
29150316 |
atggtcagtatagtgcaaccaaacactggtaaaacttaagttcaaaagtgaatgagaaccaagtaag |
29150250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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