View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_14 (Length: 349)
Name: NF3032_low_14
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 40190315 - 40190632
Alignment:
| Q |
16 |
atcatcaaacttggttcctattagaatgggaattgcagtctgcaattgaatgtaacat-ggtcatcacaaattccatataacataataatacatctaatt |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190315 |
atcatcaaacttggttcctattagaatgggaattgcagtctgcaattgaatgtaacattggtcatcacaaattccatataacataataatacatctaatt |
40190414 |
T |
|
| Q |
115 |
agggataatatttgtaagcatacatcaacttataaatttaatgagctcctatctctatcacatgttcctgaaaaattaatgtcacttaccacttatcagc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190415 |
agggataatatttgtaagcatacatcaacttataaatttaatgagctcctatctctatcacatgttcctgaaaaattaatgtcacttaccacttatcagc |
40190514 |
T |
|
| Q |
215 |
cataaaagctactaaagtttcatcactataataacgtactagtaactctaaccatttctattttaactacctcaactttttcttactataatagttcaaa |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40190515 |
cataaaagctactaaagtttcatcactataataacgtactagtaactctaaccatttctattttaactacctcaactttttcttactataatagttcaaa |
40190614 |
T |
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| Q |
315 |
agattttcgtgtgaaaat |
332 |
Q |
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|||||||||||||||||| |
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| T |
40190615 |
agattttcgtgtgaaaat |
40190632 |
T |
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