View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_16 (Length: 337)
Name: NF3032_low_16
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 316
Target Start/End: Complemental strand, 27359196 - 27358891
Alignment:
| Q |
11 |
cagagatgttaatcaacgtgaaagagtcgacagtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggttcc |
110 |
Q |
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| T |
27359196 |
cagagatgttgatcaacgtgaaagagtcgacggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggttcc |
27359097 |
T |
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| Q |
111 |
aaattttcacacaccaagcgtgtacttttacaggccaaacgacacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaagatgctggtc |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
27359096 |
aaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctggtc |
27358997 |
T |
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| Q |
211 |
ccgttctatccaatggcagcccgtctccgccgagatgaagatggtcgcgttgagctttattgcgatggtcaaggggtgctcttcgtcgatgctgatacca |
310 |
Q |
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| T |
27358996 |
ccgttctatccaatggcagcccgtctccgccgagatgaagatggtcgtgttgagctttattgcgatggtcaaggggtgctcttcgtcgatgctgatacca |
27358897 |
T |
|
| Q |
311 |
ccgctt |
316 |
Q |
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|||||| |
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| T |
27358896 |
ccgctt |
27358891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 316
Target Start/End: Original strand, 45407908 - 45408215
Alignment:
| Q |
9 |
agcagagatgttaatcaacgtgaaagagtcgacagtggtgcgtccggcggaggagacaccacgaaaggcgttatggaactccaacgtcgacttggtggtt |
108 |
Q |
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| T |
45407908 |
agcagagatgttgatcaacgtgaaagagtcgatggtggtgcgtccggcggaggagacaccacgaaaggcgttatggaattccaacgtcgacttggtggtt |
45408007 |
T |
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| Q |
109 |
ccaaattttcacacaccaagcgtgtacttttacaggccaaacgacacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaagatgctgg |
208 |
Q |
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| T |
45408008 |
ccaaattttcacacaccaagcgtgtacttttacaggccaaacggcacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaaggtgctgg |
45408107 |
T |
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| Q |
209 |
tcccgttctatccaatggcagcccgtctccgccgagatgaagatggtcgcgttgagctttattgcgatggtcaaggggtgctcttcgtcgatgctgatac |
308 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45408108 |
tcctgttctatccaatggcagcccgtctccgccgagatgaagatggtcgcattgagctttattgcgatggtcaaggggtgctcttcgtcgatgctgatac |
45408207 |
T |
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| Q |
309 |
caccgctt |
316 |
Q |
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|||||||| |
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| T |
45408208 |
caccgctt |
45408215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 82 - 305
Target Start/End: Original strand, 1127564 - 1127787
Alignment:
| Q |
82 |
tggaactccaacgtcgacttggtggttccaaattttcacacaccaagcgtgtacttttacaggccaaacgacacgtccaatttcttcgatgctaagatta |
181 |
Q |
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| T |
1127564 |
tggaattccaacgttgatttggtggtaccgaatttccatacaccaagtgtttacttttatagacctaatggtgcttccaatttctttgatgccaaggttc |
1127663 |
T |
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| Q |
182 |
tgaaggaagctctaagcaagatgctggtcccgttctatccaatggcagcccgtctccgccgagatgaagatggtcgcgttgagctttattgcgatggtca |
281 |
Q |
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| || |||||||| |||||| |||| |||||||| ||||||||||| | ||||| || || |||||||||||||| |||||| || |||| |||||||| |
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| T |
1127664 |
ttaaagaagctcttagcaaggtgcttgtcccgttttatccaatggctggtcgtcttcgtcgtgatgaagatggtcgtgttgagattgattgtgatggtca |
1127763 |
T |
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| Q |
282 |
aggggtgctcttcgtcgatgctga |
305 |
Q |
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|||||||||||| ||||| ||||| |
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| T |
1127764 |
aggggtgctctttgtcgaggctga |
1127787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 152 - 227
Target Start/End: Original strand, 1108092 - 1108167
Alignment:
| Q |
152 |
acacgtccaatttcttcgatgctaagattatgaaggaagctctaagcaagatgctggtcccgttctatccaatggc |
227 |
Q |
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|||| |||||||||||| |||| |||||||||||||||||||| ||| || |||| |||||||||||||||||||| |
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| T |
1108092 |
acacttccaatttcttcaatgccaagattatgaaggaagctctcagctaggtgcttgtcccgttctatccaatggc |
1108167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 227
Target Start/End: Complemental strand, 31967273 - 31967203
Alignment:
| Q |
157 |
tccaatttcttcgatgctaagattatgaaggaagctctaagcaagatgctggtcccgttctatccaatggc |
227 |
Q |
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| T |
31967273 |
tccaaattcttcgacaccaagattatgaaggaagctctcagcaaagtgcttgtctcattctatccaatggc |
31967203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 225
Target Start/End: Complemental strand, 32016592 - 32016524
Alignment:
| Q |
157 |
tccaatttcttcgatgctaagattatgaaggaagctctaagcaagatgctggtcccgttctatccaatg |
225 |
Q |
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||||||||||| || || |||||||||||||||||||| | ||| |||| ||| ||||||||||||| |
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| T |
32016592 |
tccaatttcttggacgccaagattatgaaggaagctctcattaaggtgcttgtcttgttctatccaatg |
32016524 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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