View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_2 (Length: 755)
Name: NF3032_low_2
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 11 - 741
Target Start/End: Complemental strand, 54727836 - 54727119
Alignment:
| Q |
11 |
atgaagttataaagaaaggagatgacatttgaacgctagatcattcttttgatgattgtataaaaaactagattgataaatgatagataaataatataac |
110 |
Q |
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| T |
54727836 |
atgaagttataaagaaaggagatgacatttgaacgctagatcattcttttgatgattgtataaaaaactagattgataaat--------------ataac |
54727751 |
T |
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| Q |
111 |
agataagaactgtgttcaataagctctaatcctcttagaatgatatccatgcagcttgttcacaagaggaagttaataaggttatggattcagcaaaagc |
210 |
Q |
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| T |
54727750 |
agataagaactgtgttcaataagctctaatcctcttagaatgatatccatgcagcttgttcacaagaggaagttaataaggttatggattcagcaaaagc |
54727651 |
T |
|
| Q |
211 |
agcacaaaagtcatgggcaaagactccactttggaagagggctgaacttcttcacaaggcagctgcaatcctcaaagaacacaaagctgcaattgcagaa |
310 |
Q |
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| T |
54727650 |
agcacaaaagtcatgggcaaagactccactttggaagagggctgaacttcttcacaaggcagctgcaatcctcaaagaacacaaagctgcaattgcagaa |
54727551 |
T |
|
| Q |
311 |
tgcttagtcaaagaaatagcaaagccagcgaaagatgcagttacagaggtgcatattgttttacattgttatgttgaataagttaagtgttgtttaggac |
410 |
Q |
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| T |
54727550 |
tgcttagtcaaagaaatagcaaagccagcgaaagatgcagttacagaggtgcatattgttttacattgttatgttgaataagttaagtgttgtttaggac |
54727451 |
T |
|
| Q |
411 |
tataatcttgagaaattatgaaaataattggaa-nnnnnnnnnnnnnncaatgaaggttgtaagatctggtgatttggtttcttactgtgctgaagaagg |
509 |
Q |
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| T |
54727450 |
tataatcttgagaaattatgaaaataattggaatttttttatttttttcaatgaaggttgtaagatctggtgatttggtttcttactgtgctgaagaagg |
54727351 |
T |
|
| Q |
510 |
agtaaggattcttggagagggaaagtttctggtttcagatagctttccgggaaatgaaaggaccaaatattgcctcacttccaaggtctatttcactaca |
609 |
Q |
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| T |
54727350 |
agtaaggattcttggagagggaaagtttctggtttcagatagctttccgggaaatgaaaggaccaaatattgcctcacttccaaggtctatttcactaca |
54727251 |
T |
|
| Q |
610 |
tattttacttaatattcaaatcataagttactatatacttcaatcattttagaactggaaaatcaataggacaatatactttataaagtcaataaattga |
709 |
Q |
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| T |
54727250 |
tattttacttaatattcaaatcataagttactatatacttcaatcattttagaactggaaaatcaataggacaatatactttataaagtcaataaattga |
54727151 |
T |
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| Q |
710 |
cacaacatcaaaatcctgagatacattcaagg |
741 |
Q |
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| T |
54727150 |
cacaacatcaaaatcctgagatacattcaagg |
54727119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 464 - 596
Target Start/End: Original strand, 3007255 - 3007387
Alignment:
| Q |
464 |
aggttgtaagatctggtgatttggtttcttactgtgctgaagaaggagtaaggattcttggagagggaaagtttctggtttcagatagctttccgggaaa |
563 |
Q |
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||||||| ||||| || |||||||| || || ||||| || ||||||||||| ||||| ||||| |||||||||||||| || ||||| ||||| || || |
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| T |
3007255 |
aggttgttagatcaggggatttggtgtcatattgtgccgaggaaggagtaagaattctcggagaaggaaagtttctggtgtctgatagttttccaggcaa |
3007354 |
T |
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| Q |
564 |
tgaaaggaccaaatattgcctcacttccaaggt |
596 |
Q |
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|||||| |||||||| || ||||| || ||||| |
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| T |
3007355 |
tgaaagaaccaaatactgtctcacatcaaaggt |
3007387 |
T |
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Back To:
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