View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_25 (Length: 288)
Name: NF3032_low_25
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 277
Target Start/End: Original strand, 6231942 - 6232198
Alignment:
| Q |
18 |
gttgtcacggtcaaccaattcatatattcttctcctgcttttaagttttgcgccaattggcaaatcagtttcatttcaagctcatgcaaaataaattctc |
117 |
Q |
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| T |
6231942 |
gttgtcacggtcaaccaattcatatattcttctcctgcttttaagttttgcgccaattggcaaatcagtttcatttcaagctcatgcaatataaattctc |
6232041 |
T |
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| Q |
118 |
attaaaaccaaacgatttctcataattatgtgatatcttgccaccaattttgcatttcttatagctttctttcctcatgcctagggaactcttaatctca |
217 |
Q |
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| T |
6232042 |
attaaaaccaaacgatttctcataattatgtgatatcttgccaccaattttgcatttcttatagctttctttccacatgcttaaggaactcttaatctca |
6232141 |
T |
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| Q |
218 |
tcacaaaggtgaaaaacaagatgcatttgttagagagagtattagaaagagagtcttcat |
277 |
Q |
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| T |
6232142 |
ttagaaaggtg-aaaacaagatgcaattgtt--agagagtattagaaagagagtcttcat |
6232198 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 21361525 - 21361473
Alignment:
| Q |
171 |
atttcttatagctttctttcctcatgcctagggaactcttaatctcatcacaa |
223 |
Q |
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| T |
21361525 |
atttcttatagttttccttccacatgcttagtgaactcttaatctcatcacaa |
21361473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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