View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_26 (Length: 287)
Name: NF3032_low_26
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_26 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 287
Target Start/End: Complemental strand, 27356160 - 27355895
Alignment:
| Q |
18 |
ctttcattgttttggcgccaaagatgcatgttcctaacatgattatttttcttcaacatttcattttcataataaatagtcattctttttgcaatacagt |
117 |
Q |
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| T |
27356160 |
ctttcattgttttggcgccaaagttgcatgttcctaacatgattatttttcttcaacatttcattttcataataaatagtcattctttttgcactacagt |
27356061 |
T |
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| Q |
118 |
tagaatgtgtcgtctttgcctattacttacttactcataaattctctactccatgtttagtgccttatttcaaggaaggaactaaacgctaataggcaat |
217 |
Q |
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| T |
27356060 |
tagaatgtgtcgtttttgcctattactgact----cataaattctttactccatgtttagtgccttatttcaaggaaggaactaaacgctaataggcaat |
27355965 |
T |
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| Q |
218 |
ttacacatgataaataatcatcaatttacaagattaataggcaatttatgttgggataggttgcttaatt |
287 |
Q |
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| T |
27355964 |
ttacacatgataaataatcatcaatttacaagattaataggcaatttatgttgggataagttgcttaatt |
27355895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 18 - 287
Target Start/End: Original strand, 45411007 - 45411265
Alignment:
| Q |
18 |
ctttcattgttttggcgccaaagatgcatgttcctaacatgattatttttcttcaacatttcattttcataataaatagtcattctttttgcaatacagt |
117 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45411007 |
ctttcattgttttggcgccaaagttgcatgttcctaacatgattatttttcttcaacatttcattttcataataaatagtcattctttttgcaatacagt |
45411106 |
T |
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| Q |
118 |
tagaatgtgtcgtctttgcctattac-ttactt-actcataaattctctactccatgtttagtgccttatttcaaggaaggaactaaacgctaataggca |
215 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45411107 |
tagaatgtgtcgtctttgcctattactttacttaactcataaattctctactccatgtttagtgccttatttcaaggaaggaactaaacgcgaat----- |
45411201 |
T |
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| Q |
216 |
atttacacatgataaataatcatcaatttacaagattaataggcaatttatgttgggataggttgcttaatt |
287 |
Q |
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| T |
45411202 |
--------atgataaataatcatcaatttacaagattaataggcaatttatgttgggataagttgcttaatt |
45411265 |
T |
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