View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_29 (Length: 277)
Name: NF3032_low_29
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_29 |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 260
Target Start/End: Complemental strand, 24189037 - 24188791
Alignment:
| Q |
14 |
agaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggag |
113 |
Q |
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| T |
24189037 |
agaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggag |
24188938 |
T |
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| Q |
114 |
taaagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaa |
213 |
Q |
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| T |
24188937 |
taaagagacggaaccaaaggttgttttcggagttaacggtgacgtctttagtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaa |
24188838 |
T |
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| Q |
214 |
gaagttaaagagacggcggttgacggtaccgttagctcgacatgaag |
260 |
Q |
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| T |
24188837 |
gaagttaaagagacggcgattgacggtgccgtttgcgcgacatgaag |
24188791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 14 - 261
Target Start/End: Complemental strand, 24179231 - 24178984
Alignment:
| Q |
14 |
agaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccggcaacagttggag |
113 |
Q |
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| T |
24179231 |
agaaaagtgtagccaccgccgtggaagaaaatgacgacaggaagggaggttgctttggtggcaccaccatctccggtgacttctccggcaacagtggggg |
24179132 |
T |
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| Q |
114 |
taaagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaa |
213 |
Q |
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| T |
24179131 |
taaagagacgaaaccaaacgttattttcggcgttaacggtaacgtctttggtggaaacgccgttaacaggagtggcgttaggtgaggatttgagatcgaa |
24179032 |
T |
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| Q |
214 |
gaagttaaagagacggcggttgacggtaccgttagctcgacatgaagc |
261 |
Q |
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| T |
24179031 |
gaagttaaagagacggcggttgacggtaccgttagctcgacatgaagc |
24178984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 2 - 236
Target Start/End: Complemental strand, 24168807 - 24168573
Alignment:
| Q |
2 |
gaggaggagcagagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccgg |
101 |
Q |
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| T |
24168807 |
gaggaggggcaaagataggtgaagccaccaccgtggaagaaaatgacaacgggaagggaggttgttttggttgcaccaccatctccgacgacttctccgc |
24168708 |
T |
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| Q |
102 |
caacagttggagtaaagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgagga |
201 |
Q |
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| T |
24168707 |
caacagtgggtgtaaagagacggaaccaaacgttattttcggagttaacggtaatgtctttgatggaaacaccgttaacgggagtggcattaggcgagga |
24168608 |
T |
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| Q |
202 |
tttgagatcgaagaagttaaagagacggcggttga |
236 |
Q |
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| T |
24168607 |
tttgcggatgaagaagttaaagagacggcggttga |
24168573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 24151981 - 24151722
Alignment:
| Q |
1 |
tgaggaggagcagagaaaagtgaagccaccaccgtggaagaaaatgacgacgggaagggaggtagttttggtggaaccaccatcttcggtgacttctccg |
100 |
Q |
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| T |
24151981 |
tgaggagggggaaagaaaactgaagccaccaccgtggaagtaaatgatgacaggaagggaggttgttttagtggcaccaccatctccagtaacctctccg |
24151882 |
T |
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| Q |
101 |
gcaaca------------gttggagtaaagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtgg |
188 |
Q |
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| T |
24151881 |
gcaacttctccggcgacggtgggagtgaagagacgaaaccaaacgttattttcggtgttaacggtaatgtctttggtggaaacgccgttaacgggagtgg |
24151782 |
T |
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| Q |
189 |
cgttaggtgaggatttgagatcgaagaagttaaagagacggcggttgacggtaccgttag |
248 |
Q |
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| T |
24151781 |
agttaggtgaggcattgagactgaagaagttaaagagacggcggttgacggtgccgttag |
24151722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 116 - 248
Target Start/End: Complemental strand, 24112575 - 24112443
Alignment:
| Q |
116 |
aagagacggaaccaaaggttgttttcggagttaacggtaacgtcttttgtggaaacgccgttaatcggagtggcgttaggtgaggatttgagatcgaaga |
215 |
Q |
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| T |
24112575 |
aagagacggaaccaaacgttatcttctgcgttaacgataacgtctttggtggaaacgccgttaacagggatggcgttaggggaagatttgcgatctaaga |
24112476 |
T |
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| Q |
216 |
agttaaagagacggcggttgacggtaccgttag |
248 |
Q |
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| T |
24112475 |
aattaagaaaacggcggttaacggtgccgttag |
24112443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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