View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_3 (Length: 738)
Name: NF3032_low_3
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-126; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 368 - 618
Target Start/End: Complemental strand, 43367571 - 43367317
Alignment:
| Q |
368 |
gagagaggtagatgatcatatcctaatcctaatatagtcttataaaagtaataacgtgtgaggtgaaattaggtgtctagtctagaagtatatgatgatt |
467 |
Q |
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| T |
43367571 |
gagagaggtagatgatcatatcctaatcctaatatagtattataaaagtaataacgtgtgaggtgaaattaggtgtctagtctagaagtatatgatgatt |
43367472 |
T |
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| Q |
468 |
agttactaataatggttagaagagaagtagtagtaagatgataatgattgacagatatggtgaatta----gataaggattgtgtactaattgatgaaaa |
563 |
Q |
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| T |
43367471 |
agttactaataatggttagaagagaagtagtagtaagatgatgatgattgacagatatggtgaattagatagataaggattgtgtactaattgatgaaaa |
43367372 |
T |
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| Q |
564 |
taaaatcaacggataaaaaagagtctggtaatattactagatcacacctcaccgc |
618 |
Q |
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| T |
43367371 |
taaaatcaacggataaaaaagagtctggtaatattactagatcacacctcaccgc |
43367317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 319
Target Start/End: Complemental strand, 43367887 - 43367603
Alignment:
| Q |
19 |
aaattaactctaaagaatcaaagcagtaacaaagtttaatagtaagaattcaaaatagaaagaaagaatatataatagtaagtaaccatactccaactaa |
118 |
Q |
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| T |
43367887 |
aaattaactctaaagaatcaaagcagtaacaaagtttaatagtaagaattcaaaaaagcaagaaagaatatataatagtaa----ccatactccaactaa |
43367792 |
T |
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| Q |
119 |
ctttgaattccaaatttagctagagaatatgctagttaatttgtcggagtcaagcatccaatgaacttgctatccactccatatttagagttttctttag |
218 |
Q |
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| T |
43367791 |
ctttgaattccaaatttagctagagaatatgctagttaatttgtcggagtcaagcatccaatgaacttgctatccactccatatttagagttttctttag |
43367692 |
T |
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| Q |
219 |
caattaaatcctattacaaaatcgacttgtaaaataagtttaatattgattgnnnnnnnnttaaaagaagaatcgatcttatttaattgaatgattaatt |
318 |
Q |
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| T |
43367691 |
caattaaatcctattacaa-------ttata----aggtttaatattgattg-aaaaaaattaaaagaagaatcgatcttatttaattgaatgattaatt |
43367604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 688 - 731
Target Start/End: Complemental strand, 43367260 - 43367217
Alignment:
| Q |
688 |
cacacgcattatggaaattctaactacaacacatattcatctca |
731 |
Q |
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| T |
43367260 |
cacacgcattatggaaattctaactacaacacatattcatctca |
43367217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 662
Target Start/End: Complemental strand, 43367312 - 43367283
Alignment:
| Q |
633 |
ttacggttacgacgttcttctgttcaaaag |
662 |
Q |
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| T |
43367312 |
ttacggttacgacgttcttctgttcaaaag |
43367283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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