View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_30 (Length: 277)
Name: NF3032_low_30
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 3 - 263
Target Start/End: Original strand, 50749210 - 50749470
Alignment:
| Q |
3 |
gggtagattatacttgatcaaagtgacattaatagtcttttttcaatggactccttcattatagattagaaggacaaactcttaccacttaattgacaca |
102 |
Q |
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| T |
50749210 |
gggtaaattattattgatcaaagtgacattaatggtcttttttcaatggactccttcattatagattagaaggacaaactcttaccacttaattgacaca |
50749309 |
T |
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| Q |
103 |
ttattgatataataattcgttcaattgcaggtgtctataattgaaaatgtatactggaaggagtttgggctactagcatttgtgtggatttcattccttg |
202 |
Q |
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| T |
50749310 |
ttattgatataataattcgttcaattgcaggtgtctataattgaaaatgtatactggaaggagtttgggctactagcatttgtgtggatttcattccttg |
50749409 |
T |
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| Q |
203 |
cactacagattgccaaggtatgttctgtcatcacagttattaatacataataccagtttat |
263 |
Q |
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| T |
50749410 |
cactacagattgccaaggtatgttctgtcatcacagttattaatacataataccagtttat |
50749470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 251
Target Start/End: Original strand, 50876057 - 50876183
Alignment:
| Q |
127 |
ttgcaggtgtctataattgaaaatgtatactggaaggagtttgggctactagcatttgtgtggatttcattccttgcactacagattgccaaggtatgtt |
226 |
Q |
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| T |
50876057 |
ttgcaggtcactataattgaaaatgtgtgccggaaggagtttggacttctagcatttgtttgggtttcactcattgcagcacagattgccaaggtttgct |
50876156 |
T |
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| Q |
227 |
ctgtcatcacagtt--attaatacata |
251 |
Q |
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| T |
50876157 |
cttccatcacagttaaattaatacata |
50876183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 244
Target Start/End: Complemental strand, 50813440 - 50813385
Alignment:
| Q |
189 |
gatttcattccttgcactacagattgccaaggtatgttctgtcatcacagttatta |
244 |
Q |
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| T |
50813440 |
gatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttatta |
50813385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 189 - 244
Target Start/End: Original strand, 50862424 - 50862479
Alignment:
| Q |
189 |
gatttcattccttgcactacagattgccaaggtatgttctgtcatcacagttatta |
244 |
Q |
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| T |
50862424 |
gatttcattccttgcactacagattgtcaaggtttgttctatcatcacagttatta |
50862479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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