View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_31 (Length: 265)
Name: NF3032_low_31
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_31 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 8053109 - 8053373
Alignment:
| Q |
1 |
caattatgcgtagaagatattcatgtcacataaataaataaatacatgaaaacgagggtgctaatatcaccacgatatgatgtttcttatgcctggtcaa |
100 |
Q |
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| T |
8053109 |
caattatgcgtagaagatattcatgtcacataaataaataaatacatgaaaacgagggtgctaatatcaccacgatatgatgtttcttatgcgtggtcaa |
8053208 |
T |
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| Q |
101 |
catacatgtactaaggaggaactaagcccacaggcccaaagccacaatacgatattagcacccacttttactcgaaaattgctcatttcacttcaacagt |
200 |
Q |
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| T |
8053209 |
catacatgtactaaggaggaactaagcccacaggcccaaagccacaatacgatattagcacccacttttactcgaaaattgctcatttcacttcaacagt |
8053308 |
T |
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| Q |
201 |
tgctctttaacacctcaaaaacatcaaaatagcttcatcgacagtaattgttgtttgttaaaatt |
265 |
Q |
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| T |
8053309 |
tgctctttaacacctcaaaaatatcaaaatagcttcatcgacagtaattgttgtttgttaaaatt |
8053373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 213
Target Start/End: Complemental strand, 342204 - 342172
Alignment:
| Q |
181 |
gctcatttcacttcaacagttgctctttaacac |
213 |
Q |
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| T |
342204 |
gctcatttcacttcaaaagttgctctttaacac |
342172 |
T |
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