View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_33 (Length: 260)
Name: NF3032_low_33
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 36463786 - 36463982
Alignment:
| Q |
27 |
tgaaaaagctcaaataattgtgagttgagttatagctcatgagatatatactaacttttcctatctgtaatgcaagtatcatgatccaaacaaagaagag |
126 |
Q |
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| T |
36463786 |
tgaaaaagctcaaataattgtgagttgagttatagctcatgagatatatactaacttttcctatctgtaatgcaagtatcatgatccaaacaaagaagag |
36463885 |
T |
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| Q |
127 |
aagtccaacttccttccaagaaacattctcaataacagaaacctgcattcatgcatgacagtttcagatttcattagaaagaatacatacatacata |
223 |
Q |
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| T |
36463886 |
aagtccaacttccttccaagaaacattctcaataacagaaacctgcattcatgcatgacagtttcagatttcattagaaagaatacatacatacata |
36463982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 36 - 206
Target Start/End: Original strand, 36472859 - 36473028
Alignment:
| Q |
36 |
tcaaataattgtgagttgagt-tatagctcatgagatatatactaacttttcctatctgtaatgcaagtatcatgatccaaacaaagaagagaagtccaa |
134 |
Q |
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|||| ||||| |||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||| |
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| T |
36472859 |
tcaactaattttgagttgaatatatagctcatgagatatatacttacttttcctatctgtaatgcaagtatcatgatccaaacagagaaaagaagtccaa |
36472958 |
T |
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| Q |
135 |
cttccttccaagaaacattctcaataacagaaacctgcattcatgcatgacagtttcagatttcattagaaa |
206 |
Q |
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| T |
36472959 |
gttccttccaataaacattctcgataacagaaacctaca--cattcatggcattttcatatttcattagaaa |
36473028 |
T |
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