View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3032_low_34 (Length: 256)

Name: NF3032_low_34
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3032_low_34
NF3032_low_34
[»] chr1 (5 HSPs)
chr1 (13-256)||(26791520-26791761)
chr1 (82-256)||(26822488-26822662)
chr1 (48-256)||(26785811-26786021)
chr1 (80-256)||(26832563-26832739)
chr1 (168-256)||(41546267-41546355)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 256
Target Start/End: Original strand, 26791520 - 26791761
Alignment:
Q  13 cagacatattatgtattcgggtttcatatattaaagttaatgcgattcttgaagaagaagaaaatgtgaaattaccaaacttccagcgagcttgaacgag 112  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||| | |||||||||||||||||||||||||||    
T  26791520 cagacatattatgtattcgggtttcatatattaaagttaaagcgattcttgaagaagaaaaaaa-gtgaagt-accaaacttccagcgagcttgaacgag 26791617  T
Q  113 accaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  26791618 accaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgt 26791717  T
Q  213 aggacatggctatgtttcattccctcctttagtgcaccagcttt 256  Q
    |||||||| ||||||||||||||||||||||| |||||||||||    
T  26791718 aggacatgactatgtttcattccctcctttagagcaccagcttt 26791761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 82 - 256
Target Start/End: Original strand, 26822488 - 26822662
Alignment:
Q  82 aattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaatc 181  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| ||||||| || |||||||||||||||||    
T  26822488 aattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggttgaaaatc 26822587  T
Q  182 agcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagcttt 256  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||    
T  26822588 agcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagcttt 26822662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 48 - 256
Target Start/End: Original strand, 26785811 - 26786021
Alignment:
Q  48 gttaatgcgattcttgaagaagaag--aaaatgtgaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggat 145  Q
    |||||||||||||| ||||||  ||  |||| | | |||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||    
T  26785811 gttaatgcgattctagaagaattagggaaaaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaat 26785910  T
Q  146 ggttcggaggagaaaatcgggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagt 245  Q
    |||| ||  ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  26785911 ggtttggcagaggaaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttaga 26786010  T
Q  246 gcaccagcttt 256  Q
    |||||||||||    
T  26786011 gcaccagcttt 26786021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 80 - 256
Target Start/End: Original strand, 26832563 - 26832739
Alignment:
Q  80 gaaattaccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcgggttcaggttgaaaa 179  Q
    |||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||| ||||||||||||||    |||||||| ||||| |||||||||    
T  26832563 gaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaa 26832662  T
Q  180 tcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagcttt 256  Q
    |||||||||||||| |||||||| |||||||||   |||| ||||||||||||||||||||||| |||||| |||||    
T  26832663 tcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgcttt 26832739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 256
Target Start/End: Complemental strand, 41546355 - 41546267
Alignment:
Q  168 tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatggctatgtttcattccctcctttagtgcaccagcttt 256  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||  ||||| |||||| |||||||| || || || |||||||||||    
T  41546355 tcaggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagcttt 41546267  T

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