View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_36 (Length: 242)
Name: NF3032_low_36
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_36 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 24422115 - 24421889
Alignment:
| Q |
1 |
ccatcaaaagtctcaatcatcaaaatcttattaacatttttctccattattggtgttcattgatattcgtataataacgggttttttccattaattccag |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422115 |
ccatcaaaagtctcaatcatcaaaatcttataaacatttttctccattattggtgttcattgatattcgtataataacgggttttttccattaattccag |
24422016 |
T |
|
| Q |
101 |
ctataatttcaacattatattgtcac---nnnnnnnnnnnnnnntccagaaatctttcataaatcattgatttgatacccttttatatagcacactttca |
197 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24422015 |
ctataatttcaacattatattgtcacaaaaaaaaaaaaacaaattccagaaatctttcataaatcattgatttgatacccttttatatagcacactttca |
24421916 |
T |
|
| Q |
198 |
tatccatgttgcacactaggtttgtgc |
224 |
Q |
| |
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||||||||||||||||||||||||||| |
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| T |
24421915 |
tatccatgttgcacactaggtttgtgc |
24421889 |
T |
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