View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_39 (Length: 238)
Name: NF3032_low_39
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 8053814 - 8053603
Alignment:
| Q |
11 |
gagatgaagttgtggtggagcacgttttttattnnnnnnntgttatttatttattacagtgaaactggttggttacctgtataatatgttcgatcctaag |
110 |
Q |
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| T |
8053814 |
gagatgaagttgtggtggagcacgttttttattaaaaaaatgttatttatttattacagtgaaactggttggttacctgtataatatgttcgatcctaag |
8053715 |
T |
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| Q |
111 |
aataaataaataaacaatctttgaattaattttctgcaaaaactttctaaataaagaaatatattttgttgtgaaatgtgaactaataaacaaatatatg |
210 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8053714 |
aataaataaataaacaatctttaaattaattttctgcaaaaactttctaaataaagaaatatattttgttgtgaaatgtgaactaataaacaaatatatg |
8053615 |
T |
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| Q |
211 |
caaattgttctt |
222 |
Q |
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|||||||||||| |
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| T |
8053614 |
caaattgttctt |
8053603 |
T |
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