View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_5 (Length: 578)
Name: NF3032_low_5
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 132 - 563
Target Start/End: Complemental strand, 7901645 - 7901214
Alignment:
| Q |
132 |
tatgtatttaattgattcgtgaaattcagctaccaatgaatcgacatgttgtattgtgcatggttggcaacgttgacaaacacttgatctccttccctag |
231 |
Q |
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| T |
7901645 |
tatgtatttaattgatttgtgaaattcagctaccaatgaatcgacatgttgtattgtgcatggttggtaacgttgacaaacacttgatctccttccctag |
7901546 |
T |
|
| Q |
232 |
catagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacattcttcacttgaatctgtagaaagaacga |
331 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901545 |
catagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacattcttcacttgaatctgtagaaagaacga |
7901446 |
T |
|
| Q |
332 |
aatgctattaagggaaccatgcattgctagctatagtggttaaggtatgaatatgatcgaaatataataactcacatcaaactggtatttctttatggca |
431 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901445 |
aatgctattaagggaaccatgcattgctagctatagtagttaaggtatgaatatgatcaaaatataataactcacatcaaactggtatttctttatggca |
7901346 |
T |
|
| Q |
432 |
gcttcagatgaagagattaaaccaacaaagagaaataagagaaagtttaatacagacatgaaacttcccaagcttgccattatgttctgcttgatgttta |
531 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7901345 |
gcttcagatgaagagattaaaccaacaaagagaaataagagaaagtttaatacagacatgaaacttcccaagcttgccattatgttctgcttgatgttta |
7901246 |
T |
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| Q |
532 |
acttctttttacttattttgaatcttgtgagt |
563 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
7901245 |
acttctttttacttattttgaatcttgtgagt |
7901214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 218 - 319
Target Start/End: Complemental strand, 7891123 - 7891022
Alignment:
| Q |
218 |
atctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggttttgcatggcacagtctactcacattcttcacttgaatc |
317 |
Q |
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||||||||| ||||||| || |||||||||||| ||||||||||||| |||||||| |||||||||||||| || |||||||||||||||| ||||||| |
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| T |
7891123 |
atctccttctgtagcataaattgttggccctggatacctcccatttactgttacaattggttttgcatggcatagcctactcacattcttcatttgaatc |
7891024 |
T |
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| Q |
318 |
tg |
319 |
Q |
| |
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|| |
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| T |
7891023 |
tg |
7891022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 255; Significance: 1e-141; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 180 - 539
Target Start/End: Complemental strand, 31213637 - 31213273
Alignment:
| Q |
180 |
ttgtattgtgcatggttggcaacgttgacaaacacttgatctccttccctagcatagatagttggccctggaaacctcccatttacagttacaatgggtt |
279 |
Q |
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||||||||||||||||||| ||||||||||| |||||||||||| ||||| |||| |||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31213637 |
ttgtattgtgcatggttggtaacgttgacaagcacttgatctccctccctggcattgatagttggccctggaaacctcccatttaccgttacaatgggtt |
31213538 |
T |
|
| Q |
280 |
ttgcatggcacagtctactcacattcttcacttgaatctgtagaaagaac-gaaatgctattaagggaaccatgcattgctagctatagt-ggttaaggt |
377 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
31213537 |
ttgcatggcacaatctactcacattcttatcttgaatctgtagaaagaacaaaaatgctattaagggaaccttgcattgctagctatagtcagttaaggc |
31213438 |
T |
|
| Q |
378 |
a---tgaatatgatcgaaatataataactcacatcaaactggtatttctttatggcagcttcagatgaagagattaaaccaacaaagagaaataagagaa |
474 |
Q |
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| ||||||| ||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
31213437 |
atgctgaatattatcaaaatattataactcacatcaaactggtatttccttatggcagcttcagatgaagagaataaaccaacaaagagaaataacagaa |
31213338 |
T |
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| Q |
475 |
agtttaatacagacatgaaacttcccaagcttgccattatgttctgcttgatgtttaacttcttt |
539 |
Q |
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| T |
31213337 |
agtttaatacagacgtgaaacttcccaagcttgccattatgttctgcttgatgtttaacttcttt |
31213273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 36462867 - 36462994
Alignment:
| Q |
11 |
cacagacatagatgcagaaaatgtctttgcaaaagtggatgtagcacttgataccttcaaagaaaattatcgaatcagaattgcaaacatactctcataa |
110 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36462867 |
cacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgataccttcaaagaaaattatcgaatcagaattgcaaacatactctcataa |
36462966 |
T |
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| Q |
111 |
atctcatttaattagtatatatatgtat |
138 |
Q |
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| T |
36462967 |
atctcatttaattagtatatatatgtat |
36462994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 36471997 - 36472064
Alignment:
| Q |
11 |
cacagacatagatgcagaaaatgtctttgcaaaagtggatgtagcacttgataccttcaaagaaaatt |
78 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| | |||||||| |
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| T |
36471997 |
cacagacatagatgcagaaaatgtcattgcaaaagtggatgtagcacttgccaccttaatagaaaatt |
36472064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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