View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3032_low_50 (Length: 204)
Name: NF3032_low_50
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_50 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 194
Target Start/End: Original strand, 12858300 - 12858478
Alignment:
| Q |
16 |
taacctatgtttctaagtcgaatccttccacaaattgaaacaatgaattgcggggccttccatactgatctacgtctattgaatgtgaacgtcttccgaa |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
12858300 |
taacctatgtttctaagtcgaatccttccacaaattgaaacaatgaaatgtggggccttccatactgatctacctctattgaatgtgaacgtcttccgaa |
12858399 |
T |
|
| Q |
116 |
atacgttagaccccaaaatacttttcagctcaagttatacttttcatcacaattaatagccaccagctcaaccttcttc |
194 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
12858400 |
atacgttagacctcaaaatacttttcagctcaagttatacttttcatcacaattaatggccactagctcaaccttcttc |
12858478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University