View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3032_low_7 (Length: 450)

Name: NF3032_low_7
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3032_low_7
NF3032_low_7
[»] chr8 (4 HSPs)
chr8 (22-389)||(15002394-15002761)
chr8 (284-377)||(15010698-15010791)
chr8 (387-439)||(15010573-15010625)
chr8 (82-160)||(11649163-11649241)
[»] chr3 (1 HSPs)
chr3 (19-189)||(13223992-13224162)
[»] chr4 (3 HSPs)
chr4 (19-189)||(490013-490183)
chr4 (73-185)||(15525633-15525745)
chr4 (189-235)||(5879640-5879686)
[»] chr5 (1 HSPs)
chr5 (50-189)||(20737602-20737741)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-185)||(187430-187596)
[»] chr7 (1 HSPs)
chr7 (142-185)||(41791683-41791726)
[»] chr6 (1 HSPs)
chr6 (63-140)||(26857485-26857562)


Alignment Details
Target: chr8 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 389
Target Start/End: Complemental strand, 15002761 - 15002394
Alignment:
Q  22 ccggaggaaggtgagggtgacgtcaagtcatcatgccccttatgccctgggcgacacaggtgctacaatggacgtgacaaaggatcgtgaccccgcgagg 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| | |||||||    
T  15002761 ccggaggaaggtgagggtgacgtcaagtcatcatgccccttatgccctgggcgacacacgttctacaatggacgtgacaaaggatcgtgatctcgcgagg 15002662  T
Q  122 gtgagctaacttcaaaaacccgtcctcagttcggattgtaagctgcaactcgcctacatgaagccggagatgaaaagagaaataaagaatatcactatcg 221  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||    
T  15002661 gtgagctaacttcaaaaacccgtcctcagttcggaatgtaggctgcaactcacctacatgaagccggagatgaaaagagaaacaaagaatatcactatcg 15002562  T
Q  222 tgtaaacaaatagtgagaattcaaaaacattatttatagataggaatattttatagataggaatacttgtgtcaagctcatcacataactcaaaatcact 321  Q
    |||||||||| ||||||||||||||||  ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15002561 tgtaaacaaaaagtgagaattcaaaaaacttatttatagataagaatattttatagataggaatacttgtgtcaagctcatcacataactcaaaatcact 15002462  T
Q  322 ttgcaactgatttgatgagaatctcattgccttctcttgaaaaacagttctctttccacccattcaac 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15002461 ttgcaactgatttgatgagaatctcattgccttctcttgaaaaacagttctctttccacccattcaac 15002394  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 284 - 377
Target Start/End: Complemental strand, 15010791 - 15010698
Alignment:
Q  284 atacttgtgtcaagctcatcacataactcaaaatcactttgcaactgatttgatgagaatctcattgccttctcttgaaaaacagttctctttc 377  Q
    |||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| ||||||||    
T  15010791 atacttgtgtcaagctcatcacataacttaaaatcacttggcaactgatttgatgaaaatctcattaccttctcttgaaaaacagctctctttc 15010698  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 387 - 439
Target Start/End: Complemental strand, 15010625 - 15010573
Alignment:
Q  387 aactataggaaggcctaaacatcttctctaagattccataatctctgctcctc 439  Q
    ||||||||||||||||||||||||| | ||||| |||||||||| ||||||||    
T  15010625 aactataggaaggcctaaacatcttttttaagaatccataatctttgctcctc 15010573  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 11649163 - 11649241
Alignment:
Q  82 tgctacaatggacgtgacaaaggatcgtgaccccgcgagggtgagctaacttcaaaaacccgtcctcagttcggattgt 160  Q
    ||||||||||| || |||| |||||| |||||| | |||||||||| |||||||||||| |||| | |||| |||||||    
T  11649163 tgctacaatggtcgagacagaggatcatgaccctgtgagggtgagccaacttcaaaaactcgtcgttagttaggattgt 11649241  T

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Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 13224162 - 13223992
Alignment:
Q  19 aagccggaggaaggtgagggtgacgtcaagtcatcatgccccttatgccctgggcgacacaggtgctacaatggacgtgacaaaggatcgtgaccccgcg 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  13224162 aagccggaggaaggtgaggatgacgtcaagtcatcatgccccttatgccctgggcgacacacgtgctacaatggacgggacaaaggatcgcgaccccgcg 13224063  T
Q  119 agggtgagctaacttcaaaaacccgtcctcagttcggattgtaagctgcaactcgcctacatgaagccgga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  13224062 agggtgagctaacttcaaaaacccgtcctcagttcggattgtaggctgcaactcgcctacatgaagccgga 13223992  T

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Target: chr4 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 490013 - 490183
Alignment:
Q  19 aagccggaggaaggtgagggtgacgtcaagtcatcatgccccttatgccctgggcgacacaggtgctacaatggacgtgacaaaggatcgtgaccccgcg 118  Q
    ||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||    
T  490013 aagccggaggaaggtgaggatgacgtcaaatcatcatgccccttatgccctgggcgacacacgtgctacaatggacgggacaaaggatcgcgaccccgcg 490112  T
Q  119 agggtgagctaacttcaaaaacccgtcctcagttcggattgtaagctgcaactcgcctacatgaagccgga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  490113 agggtgagctaacttcaaaaacccgtcctcagttcggattgtaggctgcaactcgcctacatgaagccgga 490183  T

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Target: chr4; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 73 - 185
Target Start/End: Complemental strand, 15525745 - 15525633
Alignment:
Q  73 cgacacaggtgctacaatggacgtgacaaaggatcgtgaccccgcgagggtgagctaacttcaaaaacccgtcctcagttcggattgtaagctgcaactc 172  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15525745 cgacacacgtgctacaatggacgggacaaaggatcgcgaccccgcgagggtgagctaacttcaaaaacccgtcctcagttcggattgtaggctgcaactc 15525646  T
Q  173 gcctacatgaagc 185  Q
    |||||||||||||    
T  15525645 gcctacatgaagc 15525633  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 5879640 - 5879686
Alignment:
Q  189 agatgaaaagagaaataaagaatatcactatcgtgtaaacaaatagt 235  Q
    |||||||| || |||||||||||||||||||||||||||||||||||    
T  5879640 agatgaaatgataaataaagaatatcactatcgtgtaaacaaatagt 5879686  T

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Target: chr5 (Bit Score: 120; Significance: 3e-61; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 50 - 189
Target Start/End: Original strand, 20737602 - 20737741
Alignment:
Q  50 catcatgccccttatgccctgggcgacacaggtgctacaatggacgtgacaaaggatcgtgaccccgcgagggtgagctaacttcaaaaacccgtcctca 149  Q
    ||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  20737602 catcatgccccttatgccctgggtgacacacgtgctacaatggacgggacaaaggatcgcgaccccgcgagggtgagctaacttcaaaaacccgtcctca 20737701  T
Q  150 gttcggattgtaagctgcaactcgcctacatgaagccgga 189  Q
    |||||||||||| |||||||||||||||||||||||||||    
T  20737702 gttcggattgtaggctgcaactcgcctacatgaagccgga 20737741  T

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Target: scaffold0002 (Bit Score: 107; Significance: 2e-53; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 19 - 185
Target Start/End: Complemental strand, 187596 - 187430
Alignment:
Q  19 aagccggaggaaggtgagggtgacgtcaagtcatcatgccccttatgccctgggcgacacaggtgctacaatggacgtgacaaaggatcgtgaccccgcg 118  Q
    |||||||||||||| |||| ||| | ||||||||||||||||||||||||||||||||||| |||||||||||| || |||||||| ||| || | ||||    
T  187596 aagccggaggaaggagaggatgaggccaagtcatcatgccccttatgccctgggcgacacacgtgctacaatgggcgggacaaagggtcgcgatctcgcg 187497  T
Q  119 agggtgagctaacttcaaaaacccgtcctcagttcggattgtaagctgcaactcgcctacatgaagc 185  Q
    |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| ||||||||    
T  187496 agggtgagctaactccaaaaacccgtcctcagttcggattgcaggctgcaactcgcctgcatgaagc 187430  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 142 - 185
Target Start/End: Original strand, 41791683 - 41791726
Alignment:
Q  142 cgtcctcagttcggattgtaagctgcaactcgcctacatgaagc 185  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  41791683 cgtcctcagttcggattgtaggctgcaactcgcctacatgaagc 41791726  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 63 - 140
Target Start/End: Original strand, 26857485 - 26857562
Alignment:
Q  63 atgccctgggcgacacaggtgctacaatggacgtgacaaaggatcgtgaccccgcgagggtgagctaacttcaaaaac 140  Q
    |||||||||| |||||| |||||||||||| || |||||||||||  || ||| || ||||||||| |||||||||||    
T  26857485 atgccctgggagacacacgtgctacaatggtcgggacaaaggatcacgatcccacgtgggtgagctgacttcaaaaac 26857562  T

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