View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_8 (Length: 396)
Name: NF3032_low_8
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 9 - 378
Target Start/End: Complemental strand, 26734453 - 26734084
Alignment:
| Q |
9 |
gtgagaagaactatataatacaacattggaaaaaacacccagaggccaaaaaggaggcgcatccataaacagctaaacaacctaaaaggtactcactata |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734453 |
gtgacaagaactatataatacaacattggaaaaaacacccagaggccaaaaaggaggcgcatccataaacagctaaacaacctaaaaggtactcactata |
26734354 |
T |
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| Q |
109 |
ctaatcaccaccacagtaacattatcccttacacagcgacatcccacctttacaaaatgtaaaaacaccacaacagtgtcaaatacaaagacaagaaaac |
208 |
Q |
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||||||||||||| | |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26734353 |
ctaatcaccaccataataacattatcccttacacagtgacatcccacccttacaaaacgtaaaaacaccacaacagtgtcaaatacagagacaagaaaac |
26734254 |
T |
|
| Q |
209 |
ccagagaatgatagagccgtttggccactgccaccccacccccaattnnnnnnnnnnnnttcagcatccaacacataaacttttacaccgcatttacgtc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
26734253 |
ccagagaatgatagagccgtttggccactgccaccccacccccaattgaaaaataaaaaaccagcatccaacacataaacttttacacctcatttacgtc |
26734154 |
T |
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| Q |
309 |
tctccttccaccttattgcctttaccgtcgtaaaaaatctcctgggttccaacaccattcataaaataaa |
378 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26734153 |
tctccttccaccttattgcctttaccgtcgtaaaaaatctcctgggttccaacaccattcataaaataaa |
26734084 |
T |
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