View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3032_low_9 (Length: 388)
Name: NF3032_low_9
Description: NF3032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3032_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 19172371 - 19172701
Alignment:
| Q |
1 |
agattggtgaagatgaaaggatggaggtcagagatccaaagaagaggcttttctaaggagttatgccagtcttggttgaggatttgagaagggtctgtgg |
100 |
Q |
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| T |
19172371 |
agattggtgaagatgaaaggatggaggtcagagatccaaagaagaggcttttctaaggagttatgccagtcttggttgaggatttgagaagggtctgtga |
19172470 |
T |
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| Q |
101 |
ttgcagctgcgtcgagggtgtggtagtaagattggaagtgttggtggatgagctcaacgtgagttgagaggagggttaaggaggcgccggagatagaacg |
200 |
Q |
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| T |
19172471 |
ttgcagctgcgtcgagggtgtggtagtaagattggaagtgttggtggatgagctcaacgtgagttgagaggagggttaaggagtcgccggagatagaacg |
19172570 |
T |
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| Q |
201 |
acggagtaatgggaggtgattgttcttgagtgtgttgaaccattctgtgtagtattctttgaatggacgcgacgtcgatgatgaagatgatgatgtgtgt |
300 |
Q |
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| T |
19172571 |
acggagtaatgggaggtgattgttcttgagtgtgttgaaccattctgtgtagtattctttgaatggacgcgacgtcgatgatgaagatgatgatgtgtgt |
19172670 |
T |
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| Q |
301 |
tgtttctgtctgttgaatactgatttcaaca |
331 |
Q |
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| T |
19172671 |
tgtttctgtctgttgaatactgatttcaaca |
19172701 |
T |
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