View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3033_low_1 (Length: 761)
Name: NF3033_low_1
Description: NF3033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3033_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 494; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 494; E-Value: 0
Query Start/End: Original strand, 16 - 566
Target Start/End: Complemental strand, 11822523 - 11821973
Alignment:
| Q |
16 |
acctttctccatgaaaagttgtgcaaaatgaaccctgcagtataggacaccatcaagagcagcatagtttgaatgtgtgagagggcaccctgcatgagca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11822523 |
acctttctccatgaaaagttgtgcaaaatgaaccctgcagtataggacaccatcaagagcagcatagtttgaatgtgtgagagggcaccctgcatgagca |
11822424 |
T |
|
| Q |
116 |
cacctaaagcatgtcttgtggtagatttctccttccaatgtcacctgtttaataaaaccnnnnnnntgtgttacaacttttggtcacggattttggccta |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||| |
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| T |
11822423 |
cacctaaagcatgtcttgtggtagatttctccttccaatgtcacctgtttaataaaaccaaaaaaatgtattacaacttttggtcacgggttttggccta |
11822324 |
T |
|
| Q |
216 |
atgcgtctgtattacaacttgtgtttaaatactatgtttatcaataaactatgaacgatatccaataaaatgtacgattgctttttaaaatcaaattctt |
315 |
Q |
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||||| |||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
11822323 |
atgcgcctgtattacaacttgtgtttaaatactacgtttatcgataaactatgaaccatatccaacaaaatgtacgattgctttttaaaatcaaattctt |
11822224 |
T |
|
| Q |
316 |
ggtccaagtaatatgaaattagttaacaaccaaatttttataagaaacaattttccgcaaaatcaaggatcacatcaaaaacaacaattttcctcaaaat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
11822223 |
ggtccaagtaatatgaaattagttaacaaccaaatttttataagaaacaattttccgcaaaatcaaggatcataacaaaaacaacaattttcctcaaaat |
11822124 |
T |
|
| Q |
416 |
caagaatcgcgacaaaccttttccagcggatagacagttttagagcaagtcgcacatttgtccagggtaccactgaacatggaagatagtctacttggtg |
515 |
Q |
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| T |
11822123 |
caagaatcgcgacaaaccttttccagcggatagacagttttagagcaagtcgcacatttgtccagggtaccactgaacatggaagatagtctacttggtg |
11822024 |
T |
|
| Q |
516 |
tcctattctgtaaaagatcaatacatttgacatattagaaggagcactaaa |
566 |
Q |
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| T |
11822023 |
tcctattctgtaaaagatcaatacatttgacatattagaaggagcactaaa |
11821973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 649 - 751
Target Start/End: Complemental strand, 11821890 - 11821788
Alignment:
| Q |
649 |
ttgatgcttatcaaaataataataatttgatgaaattcatctctaatattttatggcgatattagagacgaatttcatatctttttggtccctaattttc |
748 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11821890 |
ttgatgcttatcaaaataataataatttgatgaaattcatctctaatattttatggcgatattagagacgaatttcatatctttttggtccctaattttc |
11821791 |
T |
|
| Q |
749 |
atc |
751 |
Q |
| |
|
||| |
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|
| T |
11821790 |
atc |
11821788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 28937921 - 28938059
Alignment:
| Q |
17 |
cctttctccatgaaaagttgtgcaaaatgaaccctgcagtataggacaccatcaagagcagcatagtttgaatgtgtgagagggcaccctgcatgagcac |
116 |
Q |
| |
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||||||||||||||||| ||| ||||||| | |||| || ||||||||||| || ||||||||| |||||||| || |||| ||| ||||||||| |
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| T |
28937921 |
cctttctccatgaaaagctgttgaaaatgatgcttgcaatagaggacaccatctagtgcagcataggaagaatgtgtaaggtggcaacctccatgagcac |
28938020 |
T |
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| Q |
117 |
acctaaagcatgtcttgtggtagatttctccttccaatg |
155 |
Q |
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|||||||||| |||||||||| ||| |||||||||| |
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| T |
28938021 |
acctaaagcaattcttgtggtaacattccccttccaatg |
28938059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 427 - 529
Target Start/End: Original strand, 28938173 - 28938275
Alignment:
| Q |
427 |
acaaaccttttccagcggatagacagttttagagcaagtcgcacatttgtccagggtaccactgaacatggaagatagtctacttggtgtcctattctgt |
526 |
Q |
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|||||||||||||| ||||| |||||||| | |||| ||||||||||| || || ||||||||||| || || ||||| || |||||||| |||||| |
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| T |
28938173 |
acaaaccttttccaaaggataaacagtttttgtgcaaactgcacatttgtctagagttccactgaacatagaggagagtctgctgggtgtcctgttctgt |
28938272 |
T |
|
| Q |
527 |
aaa |
529 |
Q |
| |
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||| |
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|
| T |
28938273 |
aaa |
28938275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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