View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3033_low_2 (Length: 538)
Name: NF3033_low_2
Description: NF3033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3033_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 315 - 529
Target Start/End: Complemental strand, 19506731 - 19506517
Alignment:
| Q |
315 |
gacaaagttttaataaaagccaagtgttgcatgaatggaaaaatataagtaaatgaggattagaaataacctttaatggaagcaagtaacgaatgtacat |
414 |
Q |
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| T |
19506731 |
gacatagttttaataaaagtcaagtgttgcatgaatggaaaaatataagtaaatgaggattagaaataacctttaatggaagcaagtaacgaatgtacat |
19506632 |
T |
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| Q |
415 |
gtatctttggaagctattcatgttttccaatactgtaactttaccaactttgatggcttttccttccttgtcaaaacatggttttgccgtaaaatatctg |
514 |
Q |
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| T |
19506631 |
gtatctttggaagctattcatattttccaataccgtaactttaccaactttgatggcttttccttccttgtcaaaacatggttttgccgtaaaatatctg |
19506532 |
T |
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| Q |
515 |
aagctgtagtctctg |
529 |
Q |
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|||| |||||||||| |
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| T |
19506531 |
aagcagtagtctctg |
19506517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 43 - 223
Target Start/End: Complemental strand, 19507054 - 19506874
Alignment:
| Q |
43 |
tagtttaattttcttcacgaaaccaaacaaagttaannnnnnncgtaggtgtcattcagatggtaaaaacgcaaaaaatacatttaatatgtatcttaag |
142 |
Q |
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|||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19507054 |
tagtttaattttcttcaccaaaccaaacaaagttattttttttcgtaggtatcattcagatggtaaaaacgcaaaaaatacatttaatatgtatcttaag |
19506955 |
T |
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| Q |
143 |
gtgtaagttcgaaccctaccatttttatatacttnnnnnnnttgtgcattttgcgggtagacactaagaaaaaataattaa |
223 |
Q |
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| T |
19506954 |
gtgtaagttcgaaccctaccacttttataaacttaaaaaaattgtgcattttgcgggtagacactaagaaaaaataattaa |
19506874 |
T |
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