View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3033_low_3 (Length: 393)
Name: NF3033_low_3
Description: NF3033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3033_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 4775260 - 4774941
Alignment:
| Q |
11 |
caaaggtgtttcagaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
4775260 |
caaaggtgtttcagaactctactcctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgctttacgtttgagtttgaatcatgttcc |
4775161 |
T |
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| Q |
111 |
tgctcgagacaatttatataaaaggagggtcttggtgctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctgtaatcttgatggg |
210 |
Q |
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|||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4775160 |
tgctagagacaatttatttaaaaggagggtcttagtgctgtttgtttttctgtttttgtagtgaacttgaccagttgcatgtttctctaatcttgatggg |
4775061 |
T |
|
| Q |
211 |
ttggtttcgtacacctatgctgagacagttgatcctgatttgttaatatatcannnnnnnagccttttaagaaaatcagtcattgctaaattagtgttta |
310 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
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| T |
4775060 |
ttggtttcgtacacctatgctgaaacagttgatcctgatttgttaatataccatttttttagccttttaagaaaatcagtcattgctaaattagtgttta |
4774961 |
T |
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| Q |
311 |
tttaaggtattaaccccaaa |
330 |
Q |
| |
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|||||| ||||||||||||| |
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| T |
4774960 |
tttaagatattaaccccaaa |
4774941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 35 - 143
Target Start/End: Complemental strand, 29553092 - 29552984
Alignment:
| Q |
35 |
ctcatgttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaag |
134 |
Q |
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|||| ||||||||||||||| | || | |||||||||||| ||||||||||| |||||| || |||||| | ||||| || | ||||||||| |||||| |
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| T |
29553092 |
ctcaggttctttggcttaaaatggttcctctcaaagtctctatttttgcttggcgattgggtctgaatcgtattcctactaaaaacaatttatttaaaag |
29552993 |
T |
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| Q |
135 |
gagggtctt |
143 |
Q |
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||||||||| |
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| T |
29552992 |
gagggtctt |
29552984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 17173614 - 17173714
Alignment:
| Q |
40 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
139 |
Q |
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||||||||||||||||| || | ||||||||| ||||| |||||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
17173614 |
gttctttggcttaaagtggttcatctcaaagtatcaatatttgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
17173713 |
T |
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| Q |
140 |
t |
140 |
Q |
| |
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| |
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| T |
17173714 |
t |
17173714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 40 - 140
Target Start/End: Original strand, 38397707 - 38397807
Alignment:
| Q |
40 |
gttctttggcttaaagtagtacttctcaaagtctcaatttttgcttgacgattgagtttgaatcatgttcctgctcgagacaatttatataaaaggaggg |
139 |
Q |
| |
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||||||||||||||||| || ||||||||| |||||||| ||||| || ||| ||||||||| | ||||| | ||||||||||| ||||||||||| |
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| T |
38397707 |
gttctttggcttaaagtggtttctctcaaagtatcaattttcgcttggcgtttgggtttgaatcgtattcctacaaaagacaatttatttaaaaggaggg |
38397806 |
T |
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| Q |
140 |
t |
140 |
Q |
| |
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| |
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| T |
38397807 |
t |
38397807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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