View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3033_low_5 (Length: 257)
Name: NF3033_low_5
Description: NF3033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3033_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 10474724 - 10474643
Alignment:
| Q |
162 |
gccatatgtttctggaggattctcggctcgcaaccatatttcacaatcaacaacactga--aggcatgtatactctaatatt |
241 |
Q |
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| T |
10474724 |
gccatatgtttctggaggattctcggctcgcagccatatttcacaatcaacaacactgatgaggcatgtatactctaatatt |
10474643 |
T |
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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 53
Target Start/End: Complemental strand, 10507675 - 10507633
Alignment:
| Q |
11 |
aaatgatattttcattcaattaagtctatgattcttgacatat |
53 |
Q |
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| T |
10507675 |
aaataatattttctttcaattaagtctatggttcttgacatat |
10507633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Complemental strand, 30454380 - 30454336
Alignment:
| Q |
8 |
gacaaatgatattttcattcaattaagtctatgattcttgacata |
52 |
Q |
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| T |
30454380 |
gacaaatgatattttctatcaattaagtttatggttcttgacata |
30454336 |
T |
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