View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3034_high_10 (Length: 462)
Name: NF3034_high_10
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_10 |
 | |
|
| [»] scaffold0552 (3 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 401; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 11 - 444
Target Start/End: Complemental strand, 5589456 - 5589023
Alignment:
| Q |
11 |
cagagataagcttgggagttaatgcagaggattttatcattgcttggcatctgaacgaggaactcgtgtttgatgtttagaatttcaagaggtagggttc |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
5589456 |
cagagataagcttgggagttaacgcagaggattttatcattgcttggcatctgaacgaggaactcgtgtttgatatttagaatttcaagaggtagggttc |
5589357 |
T |
|
| Q |
111 |
cttgtacctgtagcggaggtccaaatccaatacctgcaaatttatgctgttgtacatgacattgggacattttcaagggacctaaaaatatgtctattct |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5589356 |
cttgtacctgtagcggaggtccaaatccaatacctgcaaatttatgctgttgtacatgacattgggtcattttcaagggacctaaaaatatgtctattct |
5589257 |
T |
|
| Q |
211 |
aaggnnnnnnnaggagcatgttacagtttagttattgattagagatgtaataaaacttatattttatacaatttgggttttatgtcacattaactatata |
310 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5589256 |
aagggttttttaggagcatgttacagtttagttattgattagagatgtaataaaacttatattttatacaatttgggttttatgtcacattaactatata |
5589157 |
T |
|
| Q |
311 |
attaacataacaaaggtacaaaatatgagaggtaggggtggataaggttcggtttttgaagaaaaccaaaccgtttgtggtttggaacgaactgaactga |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5589156 |
attaacataacaaaggtacaaaatatgagaggtaggggtggataaggttcggtttttgaagaaaaccaaaccgtttgtggtttggaacgaactgaactga |
5589057 |
T |
|
| Q |
411 |
agttatggttcaattaaccatttcgttgcctacg |
444 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
5589056 |
agttatggttcaattaaccatttcgttgcctacg |
5589023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 305
Target Start/End: Original strand, 6741728 - 6742021
Alignment:
| Q |
10 |
gcagagataagcttgggagttaatgcagaggattttatcattgcttggcatctgaacgaggaactcgtgtttgatgtttagaatttcaagaggtagggtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| || ||||| |||||||||||||||||||| | | |
|
|
| T |
6741728 |
gcagagataagcttgggagttaatgcagaggattttatcattgtttggcagctgaacaaggaagtcatgtttcttgtttagaatttcaagaggtggatgt |
6741827 |
T |
|
| Q |
110 |
ccttgtacctgtagcggaggtccaaatccaatacctgcaaatttatgctgttgtacatgacattgggacattttcaagggacctaaaaatatgtctattc |
209 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||||||||||| ||| ||||||||||||||| |
|
|
| T |
6741828 |
ccctgttcctgtagcggaggtccaaatccaatacctgcaaa--tatgctgttgtgcatgacattgagtcattttcaagggtcctgaaaatatgtctattc |
6741925 |
T |
|
| Q |
210 |
taaggnnnnnnnaggagcatgttacagtttagttattgattagagatgtaataaaacttatattttatacaatttgggttttatgtcacattaact |
305 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||| ||||||||||| |
|
|
| T |
6741926 |
taaggttgttttaggagcatgttacagtttagttattgattagagatgtaataaaacgtatactttatacaatttgtgttttatatcacattaact |
6742021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 325
Target Start/End: Original strand, 6763240 - 6763541
Alignment:
| Q |
15 |
gataagcttgggagttaatgcagaggattttatcattgcttggcatctgaacgaggaactcgtgtttgatgtttagaatttcaagaggtagggttccttg |
114 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||| |||||| |||||||||||| || ||| || |||||||||||| | || || |
|
|
| T |
6763240 |
gataaacttgggaattaatgcataggattttatcattgtttggcagctgaacgaggaagtc-------atgcagaggatttcaagaggtggatgcccctg |
6763332 |
T |
|
| Q |
115 |
tacctgtagcggaggtccaaatccaatacctgcaaatttatgctgttgtacatgacattgggacattttcaagggacctaaaaatatgtctattctaagg |
214 |
Q |
| |
|
| |||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
6763333 |
ttcctgtagcagagttccaaatcctatacctgcaaat--atgctgttgtacatgacattgggtcattttcaagggtcctgaaaatatgtctattctaagg |
6763430 |
T |
|
| Q |
215 |
nnnnnnnaggagcatgttacagtttagttattgattagagatgtaataaaacttatattttatacaatttgggttttatgtcacattaactatataatta |
314 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
6763431 |
ttgtttaaggagcatgttacagtttagttaatgattagagacgtaataaaacttatattttatacaatttgggttttatgtcacattaactctataatta |
6763530 |
T |
|
| Q |
315 |
acataacaaag |
325 |
Q |
| |
|
|||| |||||| |
|
|
| T |
6763531 |
acatgacaaag |
6763541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 322 - 382
Target Start/End: Original strand, 6763569 - 6763629
Alignment:
| Q |
322 |
aaaggtacaaaatatgagaggtaggggtggataaggttcggtttttgaagaaaaccaaacc |
382 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6763569 |
aaaggtacaaaatatgagtggtaggggtggtgaaggttcggtttttgaagaaaaccaaacc |
6763629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Original strand, 6763663 - 6763721
Alignment:
| Q |
386 |
tgtggtttggaacgaactgaactgaagttatggttcaattaaccatttcgttgcctacg |
444 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
6763663 |
tgtggtttggaacaaactgaaccaaagttatggttcagttaaccgtttccttgcctacg |
6763721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552 (Bit Score: 145; Significance: 4e-76; HSPs: 3)
Name: scaffold0552
Description:
Target: scaffold0552; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 15 - 325
Target Start/End: Complemental strand, 2764 - 2463
Alignment:
| Q |
15 |
gataagcttgggagttaatgcagaggattttatcattgcttggcatctgaacgaggaactcgtgtttgatgtttagaatttcaagaggtagggttccttg |
114 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||| |||||| |||||||||||| || ||| || |||||||||||| | || || |
|
|
| T |
2764 |
gataaacttgggaattaatgcataggattttatcattgtttggcagctgaacgaggaagtc-------atgcagaggatttcaagaggtggatgcccctg |
2672 |
T |
|
| Q |
115 |
tacctgtagcggaggtccaaatccaatacctgcaaatttatgctgttgtacatgacattgggacattttcaagggacctaaaaatatgtctattctaagg |
214 |
Q |
| |
|
| |||||||| ||| ||||||||| |||||||||||| ||||||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||| |
|
|
| T |
2671 |
ttcctgtagcagagttccaaatcctatacctgcaaat--atgctgttgtacatgacattgggtcattttcaagggtcctgaaaatatgtctattctaagg |
2574 |
T |
|
| Q |
215 |
nnnnnnnaggagcatgttacagtttagttattgattagagatgtaataaaacttatattttatacaatttgggttttatgtcacattaactatataatta |
314 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
2573 |
ttgttaaaggagcatgttacagtttagttaatgattagagacgtaataaaacttatattttatacaatttgggttttatgtcacattaactctataatta |
2474 |
T |
|
| Q |
315 |
acataacaaag |
325 |
Q |
| |
|
|||| |||||| |
|
|
| T |
2473 |
acatgacaaag |
2463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 322 - 382
Target Start/End: Complemental strand, 2435 - 2375
Alignment:
| Q |
322 |
aaaggtacaaaatatgagaggtaggggtggataaggttcggtttttgaagaaaaccaaacc |
382 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2435 |
aaaggtacaaaatatgagtggtaggggtggtgaaggttcggtttttgaagaaaaccaaacc |
2375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0552; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 386 - 444
Target Start/End: Complemental strand, 2341 - 2283
Alignment:
| Q |
386 |
tgtggtttggaacgaactgaactgaagttatggttcaattaaccatttcgttgcctacg |
444 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||||| |||||| |||| ||||||||| |
|
|
| T |
2341 |
tgtggtttggaacaaactgaaccaaagttatggttcagttaaccgtttccttgcctacg |
2283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 214
Target Start/End: Complemental strand, 16086 - 15884
Alignment:
| Q |
10 |
gcagagataagcttgggagttaatgcagaggattttatcattgcttggcatctgaacgaggaactcgtgtttgatgtttagaatttcaagaggtagggtt |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||||| || ||||| |||||||||||||||||||| | | |
|
|
| T |
16086 |
gcagagataagcttgggagttaatgcagaggattttatcattgtttggcagctgaacaaggaagtcatgtttcttgtttagaatttcaagaggtggatgt |
15987 |
T |
|
| Q |
110 |
ccttgtacctgtagcggaggtccaaatccaatacctgcaaatttatgctgttgtacatgacattgggacattttcaagggacctaaaaatatgtctattc |
209 |
Q |
| |
|
|| ||| |||||||||||||||||||||| ||||||||||| | | ||||||| |||||||||| | |||||||||||| ||| ||||||||||||||| |
|
|
| T |
15986 |
ccctgttcctgtagcggaggtccaaatcccatacctgcaaa--tcttctgttgtgcatgacattgagtcattttcaagggtcctgaaaatatgtctattc |
15889 |
T |
|
| Q |
210 |
taagg |
214 |
Q |
| |
|
||||| |
|
|
| T |
15888 |
taagg |
15884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University