View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_11 (Length: 457)
Name: NF3034_high_11
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 44496 - 44946
Alignment:
| Q |
1 |
gaaaccatggccaaaattgcgttaggaacaacccgagaggctactcaaccagattgcattcaagctctaattgttgaattcattgccacctttctctttg |
100 |
Q |
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| T |
44496 |
gaaaccatggccaaaattgcgttaggaacaacccgagaggctactcaaccagattgcattcaggctctaattgttgaattcattgccacctttctctttg |
44595 |
T |
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| Q |
101 |
tctttgctggtgttggttctgcaatgactgctggnnnnnnnnnnnnn--ctatctatctcctaactcaaaatagtactatactatagcacttatttttgt |
198 |
Q |
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| T |
44596 |
tctttgctggtgttggttctgcaatgactgctggtatatatatatatatctatctatctcctaactcaaaatagtactatactataacacttatttttgt |
44695 |
T |
|
| Q |
199 |
tctttactaaatgttcataattcaaactctggctattaagaatattcataatgaaatataaagaaaaggggtcttataaatcaaatgtatttggtctaga |
298 |
Q |
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| T |
44696 |
tctttactaaatgttcataattcaaactctggctactaagaacattcataatgaaatataaagaaaaggggtcttataaatcaaatgtatttggtctaga |
44795 |
T |
|
| Q |
299 |
gtcagttaaattaatcttttggagaaagtatggatctaagactaattccttgaaatttatttcaatagataaactaagtggagatgccttagtgggattg |
398 |
Q |
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| T |
44796 |
gtcagttaaattaatcttttggagaaagtatggatctaagactaattccttgaaatttatttcaatagataagctaagtggagatgccttagtgggtttg |
44895 |
T |
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| Q |
399 |
ttttttgtggctattgcacatgctcttgtggtggctgtaatgatctctgct |
449 |
Q |
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| T |
44896 |
ttttttgtggctattgcacatgctcttgtggtggctgtaatgatctctgct |
44946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 46548 - 46675
Alignment:
| Q |
7 |
atggccaaaattgcgttaggaacaacccgagaggctactcaaccagattgcattcaagctctaattgttgaattcattgccacctttctctttgtctttg |
106 |
Q |
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||||||||||| | ||||||||||||| ||||||| ||||||| ||||||| || ||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
46548 |
atggccaaaatcactttaggaacaacccaagaggctgctcaacctaattgcatccaggctctaattgttgaatttattgtcacctttctctttgtctttg |
46647 |
T |
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| Q |
107 |
ctggtgttggttctgcaatgactgctgg |
134 |
Q |
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| T |
46648 |
ctggtgttgcttctaaaatggctgctgg |
46675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 351 - 448
Target Start/End: Original strand, 46923 - 47020
Alignment:
| Q |
351 |
aaatttatttcaatagataaactaagtggagatgccttagtgggattgttttttgtggctattgcacatgctcttgtggtggctgtaatgatctctgc |
448 |
Q |
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|||||||||||| ||||||| ||||||||||||| ||||||||||| |||||||||||||| ||| ||| |||| ||||||| |||||||| ||||| |
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| T |
46923 |
aaatttatttcattagataagctaagtggagatggtttagtgggattattttttgtggctatggcaaatgttcttctggtggcggtaatgatatctgc |
47020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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