View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_12 (Length: 450)
Name: NF3034_high_12
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 66 - 411
Target Start/End: Complemental strand, 25108321 - 25107985
Alignment:
| Q |
66 |
atagaaacctactcttgtacattagttaatattttatgaggaattgtactctacgaaattatttataaagcattatttagatatgatcgagaaaatgtga |
165 |
Q |
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| T |
25108321 |
atagaaacctactcttgtacattagttaatattttatgaggaattgtagtctaccaaattatttataaagcattatttagatatga----gaaaatgtga |
25108226 |
T |
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| Q |
166 |
caaggtgattagacttgtttattcccnnnnnnnnnnnnnnnggtacaggagcaatagcaacttgcatgcatgtatggttgtattcttagattagaatctt |
265 |
Q |
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| T |
25108225 |
caaggtgactagacttgtttattccctttttttatttttt-ggtacaggagcaatagcaacttgcatgcatgtatggttgtattcttagattagaatctt |
25108127 |
T |
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| Q |
266 |
gaaccagtatttaattatattgaaacatatgcatatgcatgttcattcaaagaaagtaagacatggattctataatccggtcattcaaagtatatcaatt |
365 |
Q |
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| T |
25108126 |
aaaccagtatttaattatattgaagcatatgcatatg----ttcgttcaaagaaagtaagacatggattctataatccggtcattcaaagtatattaatt |
25108031 |
T |
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| Q |
366 |
aataaagcataaacttttgtgtatgatatcatggaattggatcctc |
411 |
Q |
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| T |
25108030 |
aataaagcataaacttttgtgtatgatatcatggaattggatcctc |
25107985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 25108872 - 25108841
Alignment:
| Q |
17 |
attatcaactttgatggtttactacttttgta |
48 |
Q |
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| T |
25108872 |
attatcaactttgatggtttactacttttgta |
25108841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 13234474 - 13234409
Alignment:
| Q |
238 |
tatggttgtattcttagattagaatcttgaaccagtatttaattatattgaaacatatgcatatgc |
303 |
Q |
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| T |
13234474 |
tatggttgtattcttagattggaatattaaatcgatatttagttatattgaatcatatacatatgc |
13234409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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