View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3034_high_13 (Length: 424)
Name: NF3034_high_13
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 171; Significance: 1e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 409
Target Start/End: Complemental strand, 52757290 - 52756927
Alignment:
| Q |
19 |
cacagatcaagaattttcatcatcaatttannnnnnnnnnnnnaagaaatctttcattcgaagtaaacattccgctgtgtttggaaaatagattgaaata |
118 |
Q |
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| T |
52757290 |
cacagatcaagaattttcatcatcaatttatttttatttttttaagaaatctttcattcgaagtaaacattccgctgtgtttggaaaatagattgaaata |
52757191 |
T |
|
| Q |
119 |
ttgatgattaaattctctcacacgaagttaatattttcaattaatttgttagataaaggggggaggtcaattagtaaaagggacagaaaacattataata |
218 |
Q |
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| T |
52757190 |
ttgatgattaaattctctcacacgaagttcatattttcaattaatttgttagataaaggggggaggtcaattagtaaaagggacggaaaacattataata |
52757091 |
T |
|
| Q |
219 |
taaaagtttcnnnnnnnnnnngtttgggctcaa-caagtagcaattgccactgtccttcaaaactagctttttcccatggtgggaaacaaaattcttttc |
317 |
Q |
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| T |
52757090 |
taaaagtttc-tttttttgttgtttgggctcaagcaactatca------cctgttcttcaaaactagctttttcccatggtgggaaataaa--------- |
52757007 |
T |
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| Q |
318 |
ccaggttaaacctcaccgggtttattctgtcaaagtcggggtgagttctggtgagtatatgtaatgtaggtacgggttcagttgttaggctt |
409 |
Q |
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| T |
52757006 |
--aggttaaacctcgccgggtttattatgtcaaagtcgg----------ggtgagtatatgtaatgtaggtacgggttcagttgttaagctt |
52756927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 334
Target Start/End: Original strand, 17028147 - 17028241
Alignment:
| Q |
240 |
gtttgggctcaacaagtagcaattgccac-tgtccttcaaaactagctttttcccatggtgggaaacaaaattcttttcccaggttaaacctcacc |
334 |
Q |
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| T |
17028147 |
gtttggtctcaacaagtgacaaccgccacctgtccttcaaaaccaaccttt-cccatggtaggaaacaagattcatttcccaggttaaacatcacc |
17028241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 334
Target Start/End: Original strand, 39862855 - 39862950
Alignment:
| Q |
240 |
gtttgggctcaacaagtagcaattgccac-tgtccttcaaaactagctttttcccatggtgggaaacaaaattcttttcccaggttaaacctcacc |
334 |
Q |
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||||||| || |||||| |||| |||||| ||||||||||||| ||| ||||| |||||||||||||| || | ||||||||||||||| |||| |
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| T |
39862855 |
gtttgggttcgacaagttgcaactgccacctgtccttcaaaaccagccctttcctatggtgggaaacaacatcccattcccaggttaaaccccacc |
39862950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 288 - 334
Target Start/End: Complemental strand, 14402673 - 14402627
Alignment:
| Q |
288 |
tttcccatggtgggaaacaaaattcttttcccaggttaaacctcacc |
334 |
Q |
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| T |
14402673 |
tttcccatggtgggaaacaaaatttgtttcccaggctaaatctcacc |
14402627 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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