View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3034_high_15 (Length: 395)

Name: NF3034_high_15
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3034_high_15
NF3034_high_15
[»] chr4 (15 HSPs)
chr4 (117-295)||(36935970-36936148)
chr4 (141-335)||(35097655-35097856)
chr4 (171-335)||(35072826-35072997)
chr4 (171-335)||(35106863-35107034)
chr4 (141-335)||(36940621-36940821)
chr4 (144-335)||(36961217-36961403)
chr4 (171-335)||(36296599-36296770)
chr4 (234-335)||(35098037-35098145)
chr4 (171-286)||(35072042-35072157)
chr4 (338-372)||(36935941-36935975)
chr4 (334-372)||(36940558-36940596)
chr4 (334-372)||(35097881-35097919)
chr4 (334-372)||(35098170-35098208)
chr4 (334-372)||(36953724-36953762)
chr4 (339-372)||(35072763-35072796)
[»] chr6 (3 HSPs)
chr6 (171-333)||(24014327-24014496)
chr6 (171-335)||(24040882-24041053)
chr6 (339-372)||(24040819-24040852)
[»] chr1 (1 HSPs)
chr1 (141-283)||(3123046-3123188)
[»] chr5 (1 HSPs)
chr5 (174-286)||(26578963-26579075)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 117 - 295
Target Start/End: Complemental strand, 36936148 - 36935970
Alignment:
Q  117 aaattgaagagaagatgtcactgagagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||    
T  36936148 aaattgaagagaagatgtcactgagagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagtagatgtgttcaaggcggatcttc 36936049  T
Q  217 caggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttcagataagcggagagagaaatgagaa 295  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  36936048 caggaatgaagaaggaggaagtgaaagtagagattgaagatgatatggttcttcagataagcggagagagaaatgagaa 36935970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 141 - 335
Target Start/End: Original strand, 35097655 - 35097856
Alignment:
Q  141 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtga 240  Q
    ||||||||||||||    |||||||  |||||||||||||||||||||||||||||||||||| |||| |||||||| ||| |||||||||| |||||||    
T  35097655 gagaattctgcatttgcaagcacacaagtggattggaaggagaccccagaagcacatgtgttcgaggctgatcttcctggactgaagaaggaagaagtga 35097754  T
Q  241 aagtagagattgaagatgatagggttcttcagataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcag 333  Q
    | || || ||||||| |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||| ||||||||||||||    
T  35097755 aggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgtagcag 35097854  T
Q  334 tg 335  Q
    ||    
T  35097855 tg 35097856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 171 - 335
Target Start/End: Complemental strand, 35072997 - 35072826
Alignment:
Q  171 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 270  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||||||||||||||||||    
T  35072997 gattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttc 35072898  T
Q  271 agataagcggagagagaaa---tg----agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 335  Q
    |||||||||| ||||| ||   ||    |||||||||||| |||||||||||||| ||||||||||||||||    
T  35072897 agataagcggtgagaggaacattgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtg 35072826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 171 - 335
Target Start/End: Original strand, 35106863 - 35107034
Alignment:
Q  171 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 270  Q
    ||||||||||||||||||||||| |||||||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||||||||||||||||||    
T  35106863 gattggaaggagaccccagaagctcatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaagatgatagggttcttc 35106962  T
Q  271 agataagcggagagagaaa---tg----agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 335  Q
    |||||||||| ||||| ||   ||    |||||||||||| |||||||||||||| ||||||||||||||||    
T  35106963 agataagcggtgagaggaactttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtg 35107034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 141 - 335
Target Start/End: Complemental strand, 36940821 - 36940621
Alignment:
Q  141 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtga 240  Q
    |||| |||||||||  ||||||||| ||||||||||||| |||| || | |||||| |||||||| || ||| |||||||||||||||||||||||| ||    
T  36940821 gagagttctgcatttgtgagcacacatgtggattggaag-agactcctggagcacacgtgttcaatgctgattttccaggaatgaagaaggaggaagcga 36940723  T
Q  241 aagtagagattgaagatgatagggttcttcagataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcag 333  Q
    ||||||||||||||||||||||||||||||||||||| ||| | ||||  |       |||||||||||||||||||||||||| |||||||||||||||    
T  36940722 aagtagagattgaagatgatagggttcttcagataagtggaaaaagaagcgttgagaaagaagataagaacgatcaatggcatcccgtggagcgtagcag 36940623  T
Q  334 tg 335  Q
    ||    
T  36940622 tg 36940621  T

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Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 144 - 335
Target Start/End: Original strand, 36961217 - 36961403
Alignment:
Q  144 aattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaag 243  Q
    ||||| ||||||||||||||||||||||||||||||||||| | |||||| || |||||||||||||||||||| ||||||||||||            |    
T  36961217 aattcagcattcctgagcacacgtgtggattggaaggagactcgagaagcgcacgtgttcaaggcggatcttccgggaatgaagaag------------g 36961304  T
Q  244 tagagattgaagatgatagggttcttcagataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 335  Q
    |||||||||||| |||||||||||||||||| |||||||||||||  |       ||||||||||||| || |||||||| ||||||||| ||||||||    
T  36961305 tagagattgaagttgatagggttcttcagatcagcggagagagaagcgttgagaaagaagataagaacaatgaatggcattgcgtggagcttagcagtg 36961403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 171 - 335
Target Start/End: Complemental strand, 36296770 - 36296599
Alignment:
Q  171 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 270  Q
    |||||||||||||||||||||||||| ||||| || || |||||||| ||| |||||||||| |||||||| || || ||||||||||| || |||||||    
T  36296770 gattggaaggagaccccagaagcacacgtgtttaaagctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgacagagttcttc 36296671  T
Q  271 agataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 335  Q
    |||| || |||||||| || |       |||||| |||||| | ||||||||||||||||||||||||||||    
T  36296670 agattagtggagagaggaacgttgagaaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtg 36296599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 234 - 335
Target Start/End: Original strand, 35098037 - 35098145
Alignment:
Q  234 gaagtgaaagtagagattgaagatgatagggttcttcagataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagc 326  Q
    |||||||| || || ||||||| |||||||||||||||||||||||||||||| ||||       ||||||||||||||||||||||||||| |||||||    
T  35098037 gaagtgaaggttgaaattgaaggtgatagggttcttcagataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagc 35098136  T
Q  327 gtagcagtg 335  Q
    |||||||||    
T  35098137 gtagcagtg 35098145  T

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Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 286
Target Start/End: Complemental strand, 35072157 - 35072042
Alignment:
Q  171 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 270  Q
    ||||||||||| || |||||||| ||||| ||||| || ||| | |||||  |||| || |||||||||||||| ||| |||||||||  || || ||||    
T  35072157 gattggaaggaaactccagaagcccatgtattcaaagctgatgtaccagggctgaacaaagaggaagtgaaagttgaggttgaagatggaagagtgcttc 35072058  T
Q  271 agataagcggagagag 286  Q
    ||||||  ||||||||    
T  35072057 agataacaggagagag 35072042  T

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Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 372
Target Start/End: Complemental strand, 36935975 - 36935941
Alignment:
Q  338 tgagaatgctaaaatggatcaagtgaaagctgcaa 372  Q
    |||||||||||||||||||||||||||||||||||    
T  36935975 tgagaatgctaaaatggatcaagtgaaagctgcaa 36935941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 36940596 - 36940558
Alignment:
Q  334 tgcctgagaatgctaaaatggatcaagtgaaagctgcaa 372  Q
    |||||||||||||||||||||||||| ||||||||||||    
T  36940596 tgcctgagaatgctaaaatggatcaaatgaaagctgcaa 36940558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 35097881 - 35097919
Alignment:
Q  334 tgcctgagaatgctaaaatggatcaagtgaaagctgcaa 372  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  35097881 tgcctgagaatgcgaaaatggaccaagtgaaagctgcaa 35097919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Original strand, 35098170 - 35098208
Alignment:
Q  334 tgcctgagaatgctaaaatggatcaagtgaaagctgcaa 372  Q
    ||||||||||||| |||||||| ||||||||||||||||    
T  35098170 tgcctgagaatgcgaaaatggaccaagtgaaagctgcaa 35098208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 334 - 372
Target Start/End: Complemental strand, 36953762 - 36953724
Alignment:
Q  334 tgcctgagaatgctaaaatggatcaagtgaaagctgcaa 372  Q
    ||||||| |||||||||| ||||||||||||||||||||    
T  36953762 tgcctgacaatgctaaaacggatcaagtgaaagctgcaa 36953724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 35072796 - 35072763
Alignment:
Q  339 gagaatgctaaaatggatcaagtgaaagctgcaa 372  Q
    |||||||| |||||||||||||||||||||||||    
T  35072796 gagaatgcgaaaatggatcaagtgaaagctgcaa 35072763  T

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Target: chr6 (Bit Score: 104; Significance: 1e-51; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 171 - 333
Target Start/End: Complemental strand, 24014496 - 24014327
Alignment:
Q  171 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 270  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||| || || ||||||| ||||||||||||||    
T  24014496 gattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaggaagtgaaggttgaaattgaaggtgatagggttcttc 24014397  T
Q  271 agataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcag 333  Q
    |||||||||||||||| ||||       ||||||||||||||||||||||||||| |||||||| |||||    
T  24014396 agataagcggagagaggaatgttgagaaagaagataagaacgatcaatggcatcgtgtggagcgcagcag 24014327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 171 - 335
Target Start/End: Complemental strand, 24041053 - 24040882
Alignment:
Q  171 gattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttc 270  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||||| |||||||| || || ||||||||||||||||||||||    
T  24041053 gattggaaggagaccccagaagcacatgtgttcaaggctgatcttcctggactgaagaaggaagaagtgaaggttgaaattgaagatgatagggttcttc 24040954  T
Q  271 agataagcggagagagaaatg-------agaagataagaacgatcaatggcatcgcgtggagcgtagcagtg 335  Q
    |||||||||| ||||| || |       |||||||||||| |||||||||||||| ||||||||||||||||    
T  24040953 agataagcggtgagaggaacgttgaaaaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtg 24040882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 339 - 372
Target Start/End: Complemental strand, 24040852 - 24040819
Alignment:
Q  339 gagaatgctaaaatggatcaagtgaaagctgcaa 372  Q
    |||||||| |||||||||||||||||||||||||    
T  24040852 gagaatgcgaaaatggatcaagtgaaagctgcaa 24040819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 141 - 283
Target Start/End: Original strand, 3123046 - 3123188
Alignment:
Q  141 gagaattctgcattcctgagcacacgtgtggattggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtga 240  Q
    |||||||| |||||  |||||||| | ||||| || ||||| || | |||||||||||||||||| || |||||||||||  |||||||||| || ||||    
T  3123046 gagaattccgcatttgtgagcacaagagtggactgaaaggaaactctagaagcacatgtgttcaaagctgatcttccagggttgaagaaggaagaggtga 3123145  T
Q  241 aagtagagattgaagatgatagggttcttcagataagcggaga 283  Q
    | || || ||||||||||||| |||||||||||||||||||||    
T  3123146 aggttgaaattgaagatgataaggttcttcagataagcggaga 3123188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 286
Target Start/End: Original strand, 26578963 - 26579075
Alignment:
Q  174 tggaaggagaccccagaagcacatgtgttcaaggcggatcttccaggaatgaagaaggaggaagtgaaagtagagattgaagatgatagggttcttcaga 273  Q
    |||||||| || || ||||||||  | ||||| || |||||||| ||  ||||||||||||||||||| || ||||||||||| ||| | ||| |  |||    
T  26578963 tggaaggaaacaccggaagcacacatcttcaaagccgatcttcccggcgtgaagaaggaggaagtgaaggttgagattgaagaggatcgtgttttgaaga 26579062  T
Q  274 taagcggagagag 286  Q
    |||| ||||||||    
T  26579063 taagtggagagag 26579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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