View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3034_high_17 (Length: 361)
Name: NF3034_high_17
Description: NF3034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3034_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 48483243 - 48483593
Alignment:
| Q |
1 |
gtcaagaaaaccttagcccctatggtttaccttcaaaaaggaactaggaggaatcttaaggattccagaggcaggttccattgcctcatggtttcggaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
48483243 |
gtcaagaaaaccttagcccctatggtttaccttcaaaaaggaactaggaggaatcttaaggattccagaggcaggttccattgcctcgtggtttcggaaa |
48483342 |
T |
|
| Q |
101 |
acaacttcaggccggaaccaagcgcatgttacatgaacccacagcaactcaacatcagttggcttcagtgcaccacctgcaaagagtttccccatattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483343 |
acaacttcaggccggaaccaagcgcatgttacatgaacccacagcaactcaacatcagttggcttcagtgcaccacctgcaaagagtttccccatattat |
48483442 |
T |
|
| Q |
201 |
aaaaacaaattagcaatggataaacaaatacaaccgcagcataaaaattaaaaggggaaaggggccatttaaatggtaagttgacaatgctaggacttca |
300 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483443 |
aaaaacaacttagcaatggataaaaaaatacaaccgcagcataaaaattaaaaggggaaaggggccatttaaatggtaagttgacaatgctaggacttca |
48483542 |
T |
|
| Q |
301 |
aacatatgccaaaggaaacttatgaacacatcataaatttataagttcatc |
351 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48483543 |
aacataagccaaaggcaacttatgaacacatcataaatttataagttcatc |
48483593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 29 - 183
Target Start/End: Complemental strand, 10036917 - 10036763
Alignment:
| Q |
29 |
accttcaaaaaggaactaggaggaatcttaaggattccagaggcaggttccattgcctcatggtttcggaaaacaacttcaggccggaaccaagcgcatg |
128 |
Q |
| |
|
||||||| ||||||| |||||||||| |||| ||||| |||||||||||| ||||| ||||| ||||||||||||| | | ||||||||||||| |
|
|
| T |
10036917 |
accttcacaaaggaattaggaggaattctaagaattccgagggcaggttccatgacctcagggtttttgaaaacaacttcacgttgaaaccaagcgcatg |
10036818 |
T |
|
| Q |
129 |
ttacatgaacccacagcaactcaacatcagttggcttcagtgcaccacctgcaaa |
183 |
Q |
| |
|
||||||||||||||| || ||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
10036817 |
ttacatgaacccacaacatctcgacatcagttggcttcagagcaccacctgcaaa |
10036763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University